PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013622888.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 196aa MW: 21212.7 Da PI: 9.6949 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127.1 | 5.5e-40 | 20 | 79 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++lkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGGalrnvPvGgg+rkn k+s XP_013622888.1 20 QEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGGSRKNAKRS 79 7899****************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 2.1E-33 | 21 | 77 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.394 | 23 | 77 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-23 | 23 | 71 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 25 | 61 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MMAKQLHQQQ QQQQPQFPDQ EQLKCPRCDS PNTKFCYYNN YNLSQPRHFC KSCRRYWTKG 60 GALRNVPVGG GSRKNAKRST SSSTSPSNSQ KKAKTPDPDP GSQKETNPDT DPTRMLYGFP 120 IGDQDVKGME MGGGGGGSFS SLLASNMQLG LGGIMLDGSG WDPGMGLGMG LRRSEAGNGG 180 GGSPWTDLAM NRVEKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013622888.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189344 | 3e-88 | AC189344.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042J11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013622887.1 | 1e-143 | PREDICTED: dof zinc finger protein DOF3.1-like isoform X1 | ||||
Refseq | XP_022555344.1 | 1e-143 | dof zinc finger protein DOF3.1-like | ||||
Swissprot | Q94AR6 | 1e-80 | DOF31_ARATH; Dof zinc finger protein DOF3.1 | ||||
TrEMBL | A0A0D3BCJ5 | 1e-142 | A0A0D3BCJ5_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6AN94 | 1e-142 | A0A3P6AN94_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g078490.1 | 1e-142 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21270.1 | 2e-69 | DOF zinc finger protein 2 |
Publications ? help Back to Top | |||
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