PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013622362.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 438aa    MW: 47547.7 Da    PI: 7.8801
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013622362.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.5e-07112133426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + Cr++   G C++Gd+C+F H+
  XP_013622362.1 112 KVCRYWVD-GSCSHGDKCRFLHC 133
                     68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.3242854IPR000571Zinc finger, CCCH-type
SMARTSM003560.0182853IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389108135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6109132IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4110134IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-5111133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5112131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.107.3E-45132428IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.2E-6139178IPR001680WD40 repeat
SuperFamilySSF509783.26E-46140429IPR017986WD40-repeat-containing domain
PfamPF004001.6E-5142178IPR001680WD40 repeat
PROSITE profilePS5029420.856146348IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.418146187IPR001680WD40 repeat
PRINTSPR003207.1E-7165179IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780165179IPR019775WD40 repeat, conserved site
SMARTSM003203.8218255IPR001680WD40 repeat
SMARTSM003200.16262299IPR001680WD40 repeat
PROSITE profilePS5008211.444269308IPR001680WD40 repeat
PRINTSPR003207.1E-7286300IPR020472G-protein beta WD-40 repeat
SMARTSM003201.9E-4302339IPR001680WD40 repeat
PfamPF004000.0046304338IPR001680WD40 repeat
PRINTSPR003207.1E-7326340IPR020472G-protein beta WD-40 repeat
SMARTSM0032013343386IPR001680WD40 repeat
SMARTSM003203.4389426IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MDFDSNGGNK RVFNRLGGPT RPSPQQTNTR QQVCFHWRAG RCYRNPCQFL HRELPAGPVP  60
NHANKRAPDE SGFAGPSHRR GPGFNGSHSS NSSNTWGRFG GNSRAVVTKT EKVCRYWVDG  120
SCSHGDKCRF LHCWSRGDGF SLLTQLDGHE KLVSGIALPS GSDKLYTGSK DGTIRVWDCA  180
SGQCTSVLNL GAEVGCVIAE GPWLLVGMPN LVRAWNMETN TDQSLSGPVG QVYSLVVGSD  240
LLFAGTHDGS ILAWRYNAAT NCFEQAASLM GHTVAVVTLY VGANRLYSGS MDKSIKVWSL  300
ENLQCIQTLT DHTSVVMSLI CWDQFLLSCS LDNTVKIWAA VEGGNLEVTY THKEENGVLA  360
LCGVHDAEAK PVLLCSCNDT TLRLYDLPSF TERGKIFAKQ EIRSIQIGPG GIFFTGDGTG  420
QVKVWKWSTA PAAAAAMS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A4e-201314325323Tako8
6g6n_A4e-201314325323Tako8
6g6n_B4e-201314325323Tako8
6g6n_C4e-201314325323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013622362.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324390.0AC232439.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB003D07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622362.10.0PREDICTED: zinc finger CCCH domain-containing protein 63-like
SwissprotQ9FNZ10.0C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0D3B3X20.0A0A0D3B3X2_BRAOL; Uncharacterized protein
STRINGBo3g023510.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein