PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013622213.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 477aa    MW: 52835.3 Da    PI: 7.1786
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013622213.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.52e-31169226260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ +++++ei+Y+g+H+h+k
  XP_013622213.1 169 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKVFERSH-EGQITEIVYKGTHDHPK 226
                     8***************************************9.***************85 PP
2WRKY106.61.3e-33331389159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  XP_013622213.1 331 LDDGYRWRKYGQKVVRGNPNPRSYYKCTATGCPVRKHVERASHDPKAVITTYEGKHNHD 389
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.078163227IPR003657WRKY domain
SuperFamilySSF1182907.98E-25166227IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-26167227IPR003657WRKY domain
SMARTSM007745.5E-33168226IPR003657WRKY domain
PfamPF031064.6E-24169225IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-37316391IPR003657WRKY domain
SuperFamilySSF1182901.96E-29323391IPR003657WRKY domain
PROSITE profilePS5081138.664326391IPR003657WRKY domain
SMARTSM007748.6E-39331390IPR003657WRKY domain
PfamPF031064.1E-26332389IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MDPDVSNRVD CSESRRDSSG GGARYKLKSP AKLPISRSTC ITTIPPGLSP TSFLESPVLL  60
SNIKAEPSPT TGSLFKPQAV HANSSSYTAR TIHQNILDEK NSNESFEFRP PPASTMFYAE  120
PVDKQRSEAH SFKHSPSSAT DAAASSNEIR PQTADQDESR GSAPTILADD GYNWRKYGQK  180
HVKGSEFPRS YYKCTHPNCE VKKVFERSHE GQITEIVYKG THDHPKPQPS RRNSGGLVMP  240
AQEERLDKNS PLNGRDEKGS SLYNMSPPVE QIGNDDGGDL GMSNKNNDDV DENDPFSKRR  300
KVDGGMEVTA LVKPIREPRV VVQTLSEVDI LDDGYRWRKY GQKVVRGNPN PRSYYKCTAT  360
GCPVRKHVER ASHDPKAVIT TYEGKHNHDV PMARSNNNSH HELSAPRFRP EESADAVILD  420
LGVGIASGGP DHTSNEHQQQ QETNIRSEFV HQIQTNGANG FMFVHGPPMG SWYESSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-37167391877Probable WRKY transcription factor 4
2lex_A7e-37167391877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013622213.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931360.0KM593136.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622213.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0D3B3B70.0A0A0D3B3B7_BRAOL; Uncharacterized protein
STRINGBo3g021460.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein