PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013622019.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 498aa    MW: 56177.1 Da    PI: 7.0089
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013622019.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.84e-1323901797
                    E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                    ++  +f+++h       k l + d+s + W+vkl  ++++   + ++GW+eF+ka+   +gD++vF++dg++ f  +v v 
  XP_013622019.1 23 TVDDEFLKKHT------KVLLISDSSEKIWKVKL--DGSR---LAGGGWEEFAKAHSFIDGDVLVFRHDGNEIF--HVAVS 90
                    34445555554......3477888999*******..8888...889***********************99999..55544 PP
2B363.43.5e-20152248198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+ + +++++l ++rl l+k+f+    ++++++ ++ l +e+gr+W++ l+ + +sg +++++GW +F++ang+ +gD++ Fkl++ +++++v++
  XP_013622019.1 152 FLRARVTPYSLIKDRLDLSKDFTVVSFNEHNKPCEIDLVNEKGRKWTLCLSKNSTSGVFYIRRGWVNFCSANGISQGDICKFKLSE-NGERPVLR 245
                     667788999*************7666444556669***************77777777*************************987.67779999 PP

                     EE- CS
              B3  96 vfr 98 
                     ++ 
  XP_013622019.1 246 LCP 248
                     886 PP
3B364.71.4e-20291388199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                     f++v ++++ l++g+l+++  f++e g+kk  s ++tl++++gr+W  +l+++++ g+  ++l+ GW+e++k ng+k++D++v++l+++ +++  
  XP_013622019.1 291 FLTVKLTPSRLQTGQLYISSVFVNESGIKK--SGEITLMNQDGRKWPSYLQMTGQCGSewFYLRHGWREMCKTNGVKVNDSFVLELVWEdDDA-- 381
                     77888999***************9999885..458***************9966655556***************************975666.. PP

                     EEEEE-S CS
              B3  93 vvkvfrk 99 
                     v+k+++k
  XP_013622019.1 382 VLKFCSK 388
                     8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.562193IPR003340B3 DNA binding domain
CDDcd100174.37E-10189No hitNo description
SMARTSM010192.7E-121093IPR003340B3 DNA binding domain
SuperFamilySSF1019366.08E-122790IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-112889IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-82989IPR003340B3 DNA binding domain
PfamPF023624.7E-18152248IPR003340B3 DNA binding domain
SMARTSM010194.2E-23152250IPR003340B3 DNA binding domain
PROSITE profilePS5086314.565152249IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-18154250IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-17156249IPR015300DNA-binding pseudobarrel domain
CDDcd100177.69E-18162248No hitNo description
Gene3DG3DSA:2.40.330.102.1E-19286388IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-19290389IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-21291388IPR003340B3 DNA binding domain
SMARTSM010196.6E-26291389IPR003340B3 DNA binding domain
CDDcd100176.64E-14291378No hitNo description
PROSITE profilePS5086312.929291391IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MTIPPKFSLF HRRFITGDKP VLTVDDEFLK KHTKVLLISD SSEKIWKVKL DGSRLAGGGW  60
EEFAKAHSFI DGDVLVFRHD GNEIFHVAVS PRSDSWDIRH HTSPSLVDTD DAVSDDESDD  120
EEEESDDDAD CSDSGDISVN KKKNKEAGFS CFLRARVTPY SLIKDRLDLS KDFTVVSFNE  180
HNKPCEIDLV NEKGRKWTLC LSKNSTSGVF YIRRGWVNFC SANGISQGDI CKFKLSENGE  240
RPVLRLCPSS NSHEEEEECP EVDAVKTSSV GGCSKEKRKG KGKKQNTPSQ FLTVKLTPSR  300
LQTGQLYISS VFVNESGIKK SGEITLMNQD GRKWPSYLQM TGQCGSEWFY LRHGWREMCK  360
TNGVKVNDSF VLELVWEDDD AVLKFCSKVE NKGNGSGRPR KKRVCETPIV ETEKRKRGRP  420
RVSNTNSSNL RRTQQESLSV SDQVANVKLS ILDTLNTVRQ FRADIEAREK NLEASSLEVD  480
ALGERILGIN QILNNYLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1400416KKRVCETPIVETEKRKR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in the reproductive meristem. {ECO:0000269|PubMed:10092172}.
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013622019.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622019.10.0PREDICTED: B3 domain-containing protein REM1-like isoform X1
SwissprotO650980.0REM1_BRAOB; B3 domain-containing protein REM1
TrEMBLA0A0D3BLY80.0A0A0D3BLY8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6BTH90.0A0A3P6BTH9_BRAOL; Uncharacterized protein
STRINGBo3g173800.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99501736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.11e-163B3 family protein
Publications ? help Back to Top
  1. Franco-Zorrilla JM, et al.
    Identification of genes specifically expressed in cauliflower reproductive meristems. Molecular characterization of BoREM1.
    Plant Mol. Biol., 1999. 39(3): p. 427-36
    [PMID:10092172]