PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013621892.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 540aa    MW: 58798.2 Da    PI: 5.7608
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013621892.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.9e-31300358259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  XP_013621892.1 300 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAgGCPVRKQVQRCAEDRSILITTYEGNHNHP 358
                     7****************************9****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-33284360IPR003657WRKY domain
SuperFamilySSF1182907.45E-28292360IPR003657WRKY domain
PROSITE profilePS5081129.597294360IPR003657WRKY domain
SMARTSM007741.8E-36299359IPR003657WRKY domain
PfamPF031069.6E-27301358IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MFRFPVSLGG SRDETRHDQI TPLDERRVVV GEVDFFSDKR DRVSRENIND DEDDEASKVH  60
VKMESSRVED NDRSRDVNIG LNLLTANTGS DGSTVDDGLS MDMEDKRAKF ENAQLQEELK  120
KMKIENQRLR EMLSQATNNF NSLQMQLVAV MRQQEQRNSS QDHLLATEGN AEGSKRQEVQ  180
TMVPRQFMDL GPSSGAVEQD AEVSSEERTM LRSGSPPLLL ENSNPRETGK RLLGREESPE  240
SESNAWGNPN KVSKHNPPSG SNNNNNNNGN RNLIDQSAAE ATMRKARVSV RARSEATMIT  300
DGCQWRKYGQ KMAKGNPCPR AYYRCTMAGG CPVRKQVQRC AEDRSILITT YEGNHNHPLP  360
PAAMAMASTT TAAASMLLSG SVSSQDNLMN PTNLLARAIL PCSSSMATIS ASAPFPTITL  420
DLTNSPNGNN PNMTTNNPLM QFAQRPGFNP AVLPQVVGQG LYYNQQQSKF SGLQLPAQPL  480
QMAATSSMAE SVSAASAAIA SDPNFAAALA AAITSIINGS SHQNNNGNNT NLATSNGDNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-23286362176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00447DAPTransfer from AT4G22070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013621892.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2465770.0KC246577.1 Brassica napus WRKY transcription factor 31.1 (WRKY31.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621892.10.0PREDICTED: probable WRKY transcription factor 31
SwissprotQ93WT00.0WRK31_ARATH; Probable WRKY transcription factor 31
TrEMBLA0A0D3A5220.0A0A0D3A522_BRAOL; Uncharacterized protein
STRINGBo1g025900.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22070.10.0WRKY DNA-binding protein 31