PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013621323.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family FAR1
Protein Properties Length: 684aa    MW: 78281 Da    PI: 5.6486
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013621323.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR178.31.5e-2472164190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek....dgkwevtkleleHnHela 90 
                     ++Y ++A+++GFs+rk++s++s++ g +++r+fvC+++g+++++kk+++++ r+r++ r+gC+akl ++ke     + +w+v+++++ HnHel 
  XP_013621323.1  72 EYYTAFARKTGFSIRKARSTESQNLG-VYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKLYLSKEVteggTTQWYVSQFSNVHNHELL 164
                     69********************8888.*****************************************99987677889*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-2272164IPR004330FAR1 DNA binding domain
PfamPF105513.9E-20293386IPR018289MULE transposase domain
PROSITE profilePS509669.409566600IPR007527Zinc finger, SWIM-type
PfamPF044345.2E-7570599IPR007527Zinc finger, SWIM-type
SMARTSM005751.0E-4575602IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MASKPLNNIW IRRQQCPCGD WKCYIRLEGD ESTTTYNLTK TEIESTSPSS PSPQLSTPYV  60
GQIFRTDDEA FEYYTAFARK TGFSIRKARS TESQNLGVYR RDFVCYRSGF NQPRKKANVE  120
HPRERKSVRC GCDAKLYLSK EVTEGGTTQW YVSQFSNVHN HELLEDEQVR LLPAYRKIQQ  180
TDQERILLLS KAGFPVNRIV KLLELERGVQ LPFIEKDVRN FVRACKKSVQ ESDALLNEKR  240
ESDLMELLES CKGFAERDIG FVYEFTSDES GKVESLAWAY GECVQGYSMF GDVVVFDTSY  300
RSITYGLLLG VFFGMDSNGN AILLGCVLLQ DESCSSFTWA LQTFVRFMRG GHPQTIVTDI  360
DTGLKDAIER ELPNTNHAVF MWHVVSKLGS WFSQALGSHY DEFRAGFEML CRAGTVDEFE  420
QQWDLLISRF GLVPDRHAAL LYSCRATWSP CCVRQHFLAQ TMTPEFSMSI DSFLKRIVAE  480
PTCMQALLEE VSVAASLAKQ IPQRVPYPTM KTCMPMEDHA RAVLTPYAFS VLQNEMVLSL  540
QYAVAEMANG PYILHHFKKM EGECCVFWNL ENEEIHCSCK EFEHSGILCR HSLRVLAVKN  600
CFHIPEQYFL VRWRQESSLV TEENQNGMGI GDDCVQTFQS LTETLLTESM VSKDRFDYTN  660
QELSALIDRV RNIEPANTCI THDC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013621323.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621323.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_013621324.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_013621325.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A3N6TAF30.0A0A3N6TAF3_BRACR; Uncharacterized protein
STRINGBo2g152930.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17652674
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]