PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013621021.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 476aa    MW: 50262.9 Da    PI: 9.0102
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013621021.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-055981123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  XP_013621021.1 59 FVCEICKKGFQRDQNLQLHRRGH 81
                    89*******************88 PP
2zf-C2H213.30.00025135157123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC +C+k +  +s+ k H + +
  XP_013621021.1 135 YKCDKCSKKYAVQSDWKAHSKIC 157
                     9******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.64E-75881No hitNo description
Gene3DG3DSA:3.30.160.609.4E-55881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0395981IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6375981IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM0035581100130IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-4123156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.64E-7130155No hitNo description
SMARTSM0035580135155IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MPVDLDNSST VSGDARSVSS TGNQNHKPPK KKRNLPGMPD PGAEVIALSP KTLMATNRFV  60
CEICKKGFQR DQNLQLHRRG HNLPWKLRQR SSKEVRKKVY VCPVSGCVHH DPSRALGDLT  120
GIKKHFCRKH GEKKYKCDKC SKKYAVQSDW KAHSKICGTK EYRCDCGTLF SRKDSFITHR  180
AFCDVLAEET ANNHTHTNQL CPQTSVVLEP DLKSPASAAP LTPPPTSNEP AKISSPSVLP  240
VESSSESPEN NPLEVIMDEE PPRTIGFNVS DDHSRTPRTT ASPSLYASST PPSTSLFAPS  300
SSMEPISLCL STNPSLFGRP TMAQDPPPHF LTPLSLPPPQ PAMSATALLQ KAAQMGSTGS  360
GGSLLRGLGL VSSASSSSME LSSHDLGLGL LPCSSSGGSG GGSGGLKELM LGNSCVFGPK  420
QTTLDFLGLG RAVGNGSSNP VGGLSALLTS IGGGGGMNVF GTAGEFSGKD IGRRSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-32131191363Zinc finger protein JACKDAW
5b3h_F1e-32131191363Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18597KLRQRSSKEVRKK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}.
UniprotTISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013621021.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621021.10.0PREDICTED: protein indeterminate-domain 1-like
SwissprotQ9LVQ70.0IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A0D3AYU50.0A0A0D3AYU5_BRAOL; Uncharacterized protein
STRINGBo2g167740.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-162C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]