PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013620959.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 629aa    MW: 69363.2 Da    PI: 7.8346
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013620959.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.4e-06278298526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f + G Ck Gd C +aHg
  XP_013620959.1 278 PCPDFKK-GSCKQGDMCEYAHG 298
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.18E-1631156IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.1E-1733170IPR020683Ankyrin repeat-containing domain
SMARTSM002480.02777107IPR002110Ankyrin repeat
PfamPF127966.9E-1077146IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.66177181IPR020683Ankyrin repeat-containing domain
CDDcd002046.67E-1579170No hitNo description
SMARTSM002487.2E-5112144IPR002110Ankyrin repeat
PROSITE profilePS5008811.808112147IPR002110Ankyrin repeat
Gene3DG3DSA:4.10.1000.109.0E-5269300IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4273299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.915278300IPR000571Zinc finger, CCCH-type
SMARTSM00356110308331IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.362308332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MCGLFKKLDT ENNTLSDSLS KPMNNAAECE HSFSALLEFA ADNDVEGFKH QLSLVSSVNQ  60
VSLWYRRHRL VKRMVVEQRT PLMVASLYGS LDVVKLILSF PETDLNLTCG PDKSTALHCA  120
ASGASVKALD VVKLLLSAGA DPNIIDTHGN SPVDVLVAPR GLRTVLEEIL KKDEDLSSSL  180
GSSFRSLSSS PDNGSSSLLS LDSVSSPTKA EKKEYPIDPS LPDIKSGVYS TDEFRMFSFK  240
IRPCSRAYSH DWTECPFAHP GENARRRDPR KSHYTCVPCP DFKKGSCKQG DMCEYAHGVF  300
ECWLHPAQYR TRLCKDGTGC NRRVCFFAHL KEELRPLYAS TGSGLPSSPR ASMDMASVLN  360
MLPGSPSGGA PSSPSGNGVS SMCWPHQNVP ALHLPGSNVQ LSRLRSSLNA RDMLQEFEMS  420
SSPRFVNHFS SAEVSSSSPR FSDQLAVSSV LSPSHKSALL NQLQRDKQQS MLSPIRTNLM  480
SSPKNVEQHS SPRGMEPISP MNARIKQQQL LHSRSLSSRE FGSNLPRDMM MQSDSGSPLS  540
PWSSWDQNHK VDWSVQSDEL GRLRKSHSLA NNKEADVTWV QQMVKETASP RNMNGARPLV  600
QGGLSGDPHR DGRESDILDA WLDQLQLDR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013620959.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620959.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A0D3AIR30.0A0A0D3AIR3_BRAOL; Uncharacterized protein
STRINGBo2g010960.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain