PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013620745.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 608aa MW: 69782.9 Da PI: 4.8563 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00025 | 579 | 598 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C Cg+ F ++s L +Hi XP_013620745.1 579 ECDRCGEEFESRSKLFKHIA 598 5*****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.287.110 | 1.9E-22 | 5 | 89 | IPR001623 | DnaJ domain |
SuperFamily | SSF46565 | 3.53E-22 | 6 | 111 | IPR001623 | DnaJ domain |
SMART | SM00271 | 6.8E-19 | 10 | 73 | IPR001623 | DnaJ domain |
PROSITE profile | PS50076 | 18.577 | 11 | 81 | IPR001623 | DnaJ domain |
CDD | cd06257 | 1.44E-14 | 11 | 70 | IPR001623 | DnaJ domain |
Pfam | PF00226 | 3.1E-19 | 12 | 78 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 2.8E-13 | 13 | 31 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 2.8E-13 | 31 | 46 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 2.8E-13 | 53 | 73 | IPR001623 | DnaJ domain |
PROSITE pattern | PS00636 | 0 | 58 | 77 | IPR018253 | DnaJ domain, conserved site |
SuperFamily | SSF57667 | 8.14E-15 | 300 | 350 | No hit | No description |
SMART | SM00451 | 5.9E-8 | 305 | 339 | IPR003604 | Zinc finger, U1-type |
Pfam | PF12171 | 3.4E-10 | 307 | 333 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.82 | 308 | 332 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 310 | 332 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.702 | 578 | 607 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.6 | 578 | 602 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 580 | 602 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 608 aa Download sequence Send to blast |
MASSSRSEKR CLYEILDVSK ESSPEEIRSS YRRLALQRHP DKLIKAGGIS EADATAQFQE 60 LVHAYEVLSD PKERAWYDSH RSQILFADQG SAGGSKSGGM PGGSVPDLFA FFSTSVYSGY 120 SDTGKGFYKV YFDVFNSVYL NEIKFARTLG LSMDSVREAP IMGNLESPYS QVTAFYNYWL 180 GFSTVMDFCW VDEYDTMAGP NRRMRRKMEE ENKKVRKKAK REYNETVRGL AAFVKKRDKR 240 VVDMMVKKSA EMELKKAEER ERKKKMEKER LERAMNYEEP DWAKAQGEEE EEVEEDGGDD 300 GKKKSEQLYC IVCSKKFKSE KQWKNHEQSK KHKEKVAELR ESFSDVEEEE EEIDEIPETV 360 EELEELNMED EVVGEADETD DKYFMAEEDV KGSSESEDED GDVDDDELIL LKKMVEKNKR 420 KNVVSREEDE VHVEIESDSE FDNQKSTTGR NRKGKKERNK RNAGKDITDD ANKTQISMDD 480 GDNSDDNADA TESASGAVEE SQKDEAEPME YDNRKSTGRR RRSKKGKDKS SEADDTQKAM 540 EETQEDRSEY IEHKKAPRSK KSTRGMKSKG TSKKASNNEC DRCGEEFESR SKLFKHIADT 600 GHATVKSR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 212 | 220 | KKVRKKAKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013620745.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013620745.1 | 0.0 | PREDICTED: dnaJ homolog subfamily C member 21-like | ||||
Refseq | XP_013620746.1 | 0.0 | PREDICTED: dnaJ homolog subfamily C member 21-like | ||||
Swissprot | Q9C911 | 0.0 | JJJ1_ARATH; DNAJ protein JJJ1 homolog | ||||
TrEMBL | A0A0D3AQH0 | 0.0 | A0A0D3AQH0_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g081060.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8869 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74250.1 | 0.0 | DNAJ heat shock N-terminal domain-containing protein |