PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013620545.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 486aa    MW: 54561.1 Da    PI: 5.5657
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013620545.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.11e-1026911897
                    --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                    l  +f+++h+++      l + d s + Wevkl  ++++    l++GW+eF+  n+  +g ++vF+++g++ f  +v v 
  XP_013620545.1 26 LDDEFISSHMKV------LLISDASDKIWEVKL--DGNR----LAGGWEEFAAVNNFSDGNVLVFRHNGEEIF--HVAVS 91
                    667788788755......78889**********..9999....***********************9998888..77665 PP
2B374.81e-23132229199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+ + +++++l+++rl l+k+f      ++++++++ l +e+gr+W+++l+ + +sg++++t+GW++F+ angL  gDf+ Fkl++ s++++v+ 
  XP_013620545.1 132 FLRARVTPYSLTKDRLDLSKDFKFMLFDEHKKQFEIHLVNEKGRKWTLRLSRNISSGAFYITRGWSNFCAANGLIRGDFCYFKLSE-SGERPVLL 225
                     6677899***************644455556889*****************9*******************************976.88889999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     ++++
  XP_013620545.1 226 LCSH 229
                     9987 PP
3B352.77.7e-17268367299
                     EEE-..-HHHHTT-E...E--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   2 fkvltpsdvlksgrl...vlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     ++   +++ +k+g+l   +l+   ++e g+kk  s ++tl d +gr+W  +l    + ++++++++kGW+e+++ang++++D++v++l+  ++++
  XP_013620545.1 268 LTRKFTPSRFKTGQLyisMLSSGVLRESGIKK--SGEITLLDNDGRKWPSYLHKtgQPGGEWCYIRKGWREMCEANGVEVNDSFVLELIC-EDAN 359
                     55666788888888844444555566767774..559***************7744555555**************************99.8888 PP

                     .EEEEE-S CS
              B3  92 lvvkvfrk 99 
                     + +k+++k
  XP_013620545.1 360 PIFKFHSK 367
                     99998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100173.60E-61090No hitNo description
SMARTSM010197.6E-101194IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-103591IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-103691IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.4193894IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-17131228IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.2E-23132230IPR003340B3 DNA binding domain
PfamPF023625.3E-20132229IPR003340B3 DNA binding domain
PROSITE profilePS5086315.961132229IPR003340B3 DNA binding domain
SuperFamilySSF1019367.46E-20132230IPR015300DNA-binding pseudobarrel domain
CDDcd100173.06E-17142228No hitNo description
Gene3DG3DSA:2.40.330.105.5E-14262366IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-14263364IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.503267368IPR003340B3 DNA binding domain
SMARTSM010193.6E-13267368IPR003340B3 DNA binding domain
PfamPF023622.2E-18267367IPR003340B3 DNA binding domain
CDDcd100175.78E-12296366No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MVVPPPQPSL FQLTFLTGDK PILQTLDDEF ISSHMKVLLI SDASDKIWEV KLDGNRLAGG  60
WEEFAAVNNF SDGNVLVFRH NGEEIFHVAV SSESDDDESD DTDDSESDDS EDNDEGDSSL  120
VNKEVDSSSD CFLRARVTPY SLTKDRLDLS KDFKFMLFDE HKKQFEIHLV NEKGRKWTLR  180
LSRNISSGAF YITRGWSNFC AANGLIRGDF CYFKLSESGE RPVLLLCSHE SGNGHEDKEE  240
EECPEADTLK ICSVGGCSNE KNTPSRFLTR KFTPSRFKTG QLYISMLSSG VLRESGIKKS  300
GEITLLDNDG RKWPSYLHKT GQPGGEWCYI RKGWREMCEA NGVEVNDSFV LELICEDANP  360
IFKFHSKIKN KGKGNIVTSK KRALHARTVE RTPGVEIDGE RGSKRGCTRV SNRSNTYLKG  420
KQPESCSVSD QVANVRQSVL DTLNTIRHFK AELKTRERNL EASLLELDGL GEKILGISKI  480
LNNNLA
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in the reproductive meristem. {ECO:0000269|PubMed:10092172}.
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013620545.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0517720.0AF051772.1 Brassica oleracea var. botrytis reproductive meristem gene 1 (REM1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620545.10.0PREDICTED: B3 domain-containing protein REM1 isoform X1
SwissprotO650980.0REM1_BRAOB; B3 domain-containing protein REM1
TrEMBLA0A0D3A2U00.0A0A0D3A2U0_BRAOL; Uncharacterized protein
STRINGBo1g011150.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99501736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.11e-121B3 family protein
Publications ? help Back to Top
  1. Franco-Zorrilla JM, et al.
    Identification of genes specifically expressed in cauliflower reproductive meristems. Molecular characterization of BoREM1.
    Plant Mol. Biol., 1999. 39(3): p. 427-36
    [PMID:10092172]