PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013620328.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 371aa MW: 38833 Da PI: 9.3753

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013620328.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.7	9.9e-39	53	183	2	106
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssas..... 83 +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p i++ tgt++++a+++ ++ XP_013620328.1 53 PAAKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPVIIASTGTGTIPANFStlnatlrgG-------GGstifa 140 5789************************************************************88888776433223221.......1122221 PP TCP 84 ..nsssg....................kaaksaa.kskksqksaas 106 + + +++++++ s + +++a+ XP_013620328.1 141 qsS---KsspfhstgmslyednngtngSSSSASKlLSAATAAQNAA 183 111...1223444444444444444442222222244444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-33	59	159	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.723	59	113	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MDQNSHDRPT AEAGLQLNST ENPSPGRSVP FAGGATSSST STSSGTALAV VKPAAKKPSK 60 DRHTKVDGRG RRIRMPALCA ARVFQLTREL GHKSDGETIE WLLQQAEPVI IASTGTGTIP 120 ANFSTLNATL RGGGGSTIFA QSSKSSPFHS TGMSLYEDNN GTNGSSSSAS KLLSAATAAQ 180 NAAVFGFHHQ GYPPIMSAER NQPTLGKPYR EDYFKESEPS GSSQKPGQFQ EQEMGPGPGM 240 GRGTANVVPQ PMWAVAPGTT NGGSAFWMLP MSGSGGREQM QQQPGHQMWA FNQGSYPVGT 300 GRVVTAPMGS MMLGGQQLGL GVAEGNMAAA MRGSRGGGGD GLAMTLDQHQ HQHHQQHQEP 360 NQSQASGDDK K

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MDQNSHDRPT AEAGLQLNST ENPSPGRSVP FAGGATSSST STSSGTALAV VKPAAKKPSK  60
DRHTKVDGRG RRIRMPALCA ARVFQLTREL GHKSDGETIE WLLQQAEPVI IASTGTGTIP  120
ANFSTLNATL RGGGGSTIFA QSSKSSPFHS TGMSLYEDNN GTNGSSSSAS KLLSAATAAQ  180
NAAVFGFHHQ GYPPIMSAER NQPTLGKPYR EDYFKESEPS GSSQKPGQFQ EQEMGPGPGM  240
GRGTANVVPQ PMWAVAPGTT NGGSAFWMLP MSGSGGREQM QQQPGHQMWA FNQGSYPVGT  300
GRVVTAPMGS MMLGGQQLGL GVAEGNMAAA MRGSRGGGGD GLAMTLDQHQ HQHHQQHQEP  360
NQSQASGDDK K

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00228	DAP	Transfer from AT1G72010	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013620328.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013620328.1	0.0	PREDICTED: transcription factor TCP22-like
Swissprot	Q9C7G4	1e-178	TCP22_ARATH; Transcription factor TCP22
TrEMBL	A0A0D3APY1	0.0	A0A0D3APY1_BRAOL; Uncharacterized protein
STRING	Bo2g075210.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7053	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72010.1	1e-136	TCP family protein

Publications ? help Back to Top
Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Dong H, et al. Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis. Genes Dev., 2017. 31(2): p. 197-208 [PMID:28167503]