PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013620127.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BBR-BPC
Protein Properties Length: 277aa    MW: 31281.6 Da    PI: 9.7315
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013620127.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind38.34.4e-121103192
       GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki..rernlalsekkaav............aerd........maflqrdkalaernka 73 
                     md+dg  +r +gyy+++ +++  lg+ql+ si +r++k+    +n +++++++++             +rd        m++    ++l++    
  XP_013620127.1   1 MDEDGLSNRDWGYYDQS-QFRPSLGFQLIPSIVDRNEKQflCPQNPNFITTNNSYcgggssssnvmsFPRDytssdapfMSY----SWLNQ---- 86 
                     9**************99.********************99966677778999999777776666655455566666666666....88888.... PP

       GAGA_bind  74 lverdnkllalllvensla 92 
                       +rd+k++++l++  +  
  XP_013620127.1  87 --HRDSKFFNNLPNPSNHH 103
                     ..9********99766544 PP
2GAGA_bind265.62.8e-81128277143301
       GAGA_bind 143 eakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtt 237
                     e+ +++++    + ++pk+kk++k k+        +  +++++++   +ksi++v+ngv++D++ lPvPvCsCtG ++qCY+WG+GGWqSaCCtt
  XP_013620127.1 128 ESLKRRQCGG-GQRADPKAKKERKLKD--------NIVPRMQRERSPLRKSIEMVINGVTIDIGCLPVPVCSCTGLSQQCYRWGCGGWQSACCTT 213
                     3444444443.3334556666655555........3445555567789*********************************************** PP

       GAGA_bind 238 tiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     ++S++PLP++tk+rgaRiagrKmSqgafkk+LekL+a+G+d+snp+DLk+hWAkHGtnkfvtir
  XP_013620127.1 214 NVSMFPLPMNTKKRGARIAGRKMSQGAFKKVLEKLSADGFDFSNPIDLKSHWAKHGTNKFVTIR 277
                     ***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062178.4E-831277IPR010409GAGA-binding transcriptional activator
SMARTSM012264.5E-1311277IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDEDGLSNRD WGYYDQSQFR PSLGFQLIPS IVDRNEKQFL CPQNPNFITT NNSYCGGGSS  60
SSNVMSFPRD YTSSDAPFMS YSWLNQHRDS KFFNNLPNPS NHHTLLDPRA QPMQLLQIPK  120
PEAGEVYESL KRRQCGGGQR ADPKAKKERK LKDNIVPRMQ RERSPLRKSI EMVINGVTID  180
IGCLPVPVCS CTGLSQQCYR WGCGGWQSAC CTTNVSMFPL PMNTKKRGAR IAGRKMSQGA  240
FKKVLEKLSA DGFDFSNPID LKSHWAKHGT NKFVTIR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the gynobasal portion of the ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013620127.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620127.10.0PREDICTED: protein BASIC PENTACYSTEINE3
RefseqXP_013748528.10.0protein BASIC PENTACYSTEINE3
SwissprotQ9C9X61e-141BPC3_ARATH; Protein BASIC PENTACYSTEINE3
TrEMBLA0A0D3ANU40.0A0A0D3ANU4_BRAOL; Uncharacterized protein
STRINGBo2g057480.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM153471518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68120.11e-138basic pentacysteine 3