PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013619887.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 155aa MW: 17563.1 Da PI: 8.1639 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123 | 1.5e-38 | 17 | 116 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++r+kC+++C+la+yfp+e++++f n+hklFG+sn++k++k ++e +r++am+ l+++A+arardPv G+++++l+l++q+++++ael+ XP_013619887.1 17 ACAACKYQRKKCTEHCILARYFPQEKQNQFLNAHKLFGVSNITKFIKGVEECQRDIAMNNLIFHANARARDPVWGVCKIMLDLKHQIACTQAELN 111 7********************************************************************************************** PP DUF260 96 llkee 100 l++++ XP_013619887.1 112 LVHHQ 116 **997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 18 | No hit | No description |
PROSITE profile | PS50891 | 23.754 | 16 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-35 | 17 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 155 aa Download sequence Send to blast |
MSLSKFHGGS SSSSTTACAA CKYQRKKCTE HCILARYFPQ EKQNQFLNAH KLFGVSNITK 60 FIKGVEECQR DIAMNNLIFH ANARARDPVW GVCKIMLDLK HQIACTQAEL NLVHHQNLAM 120 CQTIALQQQF GCYSYGDLLE QGDEYLNIDG HVHQK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-25 | 10 | 118 | 4 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-25 | 10 | 118 | 4 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013619887.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619887.1 | 1e-114 | PREDICTED: LOB domain-containing protein 7 | ||||
Refseq | XP_013675601.1 | 1e-114 | LOB domain-containing protein 7 | ||||
Swissprot | Q9SSM9 | 3e-58 | LBD7_ARATH; LOB domain-containing protein 7 | ||||
TrEMBL | A0A0D3AQ80 | 1e-113 | A0A0D3AQ80_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6D9R6 | 1e-113 | A0A3P6D9R6_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g079170.1 | 1e-114 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15466 | 14 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72980.1 | 1e-52 | LOB domain-containing protein 7 |