PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013619870.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 108aa    MW: 12296.2 Da    PI: 4.6937
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013619870.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF24.92.5e-081222142
                    HHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF 21 lKKAeELSvLCdaevaviifss 42
                    +KK +ELS+LC+++++ ii+s+
  XP_013619870.1  1 MKKLNELSTLCGINACAIIYSP 22
                    8********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003191.6E-6123IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.27E-13167IPR002100Transcription factor, MADS-box
CDDcd002662.24E-19157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MKKLNELSTL CGINACAIIY SPYDSNPEVW PSNSGVQRII SEFRTLPEMD QNKKMVDQET  60
FLKQRIAKAS DNLKKQRKDI LEMEMTEVMF QCLIGTIGML ASESESES
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013619870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619870.12e-75PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-54AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A078H7X32e-62A0A078H7X3_BRANA; BnaC02g26190D protein
TrEMBLA0A398ACT03e-61A0A398ACT0_BRACM; Uncharacterized protein
STRINGBra018490.1-P5e-61(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27810.16e-62M-type_MADS family protein
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]