PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013619750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | LBD | ||||||||
Protein Properties | Length: 312aa MW: 34403.3 Da PI: 7.7465 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138.5 | 2.4e-43 | 9 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++Cv+apyfp +qp+kfa+vhk+FGasnv kll++l ++reda++sl+yeAear+rdPvyG+vg+i+ lq++l+ql+++l+ XP_013619750.1 9 PCAACKFLRRKCTQECVFAPYFPPDQPHKFAYVHKIFGASNVAKLLNDLASNQREDAVNSLFYEAEARLRDPVYGCVGLISILQHRLKQLQHDLD 103 7*********************************************************************************************9 PP DUF260 96 llkee 100 +k+e XP_013619750.1 104 NAKKE 108 99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038155 | 7.5E-88 | 6 | 305 | IPR017414 | LOB domain-containing protein 10/36/41 |
PROSITE profile | PS50891 | 27.059 | 8 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-42 | 9 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MASSSSSSPC AACKFLRRKC TQECVFAPYF PPDQPHKFAY VHKIFGASNV AKLLNDLASN 60 QREDAVNSLF YEAEARLRDP VYGCVGLISI LQHRLKQLQH DLDNAKKELA AYAAPNAMLP 120 MHHPQPHFMS LPPQPQRPSS ASSSASVLTQ QQQHHNLLPV LAIPTEQLLY HQQHIFEAQQ 180 LAAVNSVSRD QLNEMFRAYG GGSNSPHHHH NQPQFDILRF NSGFGSVPTG SVTVTGFNQL 240 SSSGTTITGM SPSLALGDSF VDSPSTNDNY HRDQQLQHQQ SSQPLPLQTQ ETQTRPNSKS 300 EEGRGNIIGS SR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-49 | 3 | 114 | 5 | 116 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-49 | 3 | 114 | 5 | 116 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in trichomes, at the base of many lateral organs, including branching points of the inflorescence and floral organs and in the distal part of the pistil at stages when style and stigma start to develop. Also detected in pedicels and at the base of petals and sepals. {ECO:0000269|PubMed:15821980}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013619750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619750.1 | 0.0 | PREDICTED: LOB domain-containing protein 36-like | ||||
Refseq | XP_022551342.1 | 0.0 | LOB domain-containing protein 36-like | ||||
Refseq | XP_022553033.1 | 0.0 | LOB domain-containing protein 36-like | ||||
Swissprot | Q9FKZ3 | 1e-142 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A078IG08 | 0.0 | A0A078IG08_BRANA; BnaC02g44040D protein | ||||
TrEMBL | A0A0D3AYV3 | 0.0 | A0A0D3AYV3_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g167820.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8008 | 24 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 1e-115 | ASYMMETRIC LEAVES 2-like 1 |
Publications ? help Back to Top | |||
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