PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013619736.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 310aa    MW: 37029.7 Da    PI: 6.2991
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013619736.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix72.85.8e-2345127186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+ +e+++L+ +r+e+++++ ++k++k lWe v+ km+++gf r+++qCk+kw+nl  ryk ++++e +   + ++++p++++++
  XP_013619736.1  45 KWSIDETKELLGIREELDQTFMETKRNKLLWEVVACKMADKGFARNAEQCKSKWKNLVSRYKVCETTEPE---PIRQQFPFYNEIQ 127
                     7********************************************************************8...566789***9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122037.56E-2044106No hitNo description
PfamPF138371.7E-1944129No hitNo description
PROSITE profilePS500907.44545102IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDRRNPFHLH DHQLYQLFQQ QQLTPPPQST TAAMDLGGGG ERIPKWSIDE TKELLGIREE  60
LDQTFMETKR NKLLWEVVAC KMADKGFARN AEQCKSKWKN LVSRYKVCET TEPEPIRQQF  120
PFYNEIQSIF TARMQRMLWS EPRTSSKRKH NQFSSDEEVE EVEELNQDIN EELLSFVETH  180
KKDAEVITTS TFTNPKKRAK KGKGTSKAEV AGSTLKEMLE DFMRQTVKME KEWRDAWEMK  240
AREKEKREKE WQRRMAELEE ERAAAERRWM EREDERRLRE EARAQKRDTL IDVLLNQINR  300
DQDDDQHQGF
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots and flower buds. {ECO:0000269|PubMed:15044016}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013619736.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2409350.0AC240935.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrF042C17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619736.10.0PREDICTED: trihelix transcription factor GT-3a-like
SwissprotQ9SDW01e-134TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A0D3AHE00.0A0A0D3AHE0_BRAOL; Uncharacterized protein
STRINGBo2g001280.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.11e-107Trihelix family protein