PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013619374.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARR-B | ||||||||
Protein Properties | Length: 626aa MW: 69897.1 Da PI: 5.37 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.1 | 9.5e-29 | 202 | 255 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r++W++eLH++Fv+av+qL G +kA+Pk+il+ m+++gLt+e+v+SHLQkYRl XP_013619374.1 202 KRRVVWSQELHQKFVHAVQQL-GLDKAVPKKILDYMNIEGLTRENVASHLQKYRL 255 689******************.********************************8 PP | |||||||
2 | Response_reg | 69.8 | 1.1e-23 | 23 | 130 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl vdD+p+ ++ l+++l + +y +v+ + ++++ale+l+ek +Dl++ D+emp+ dG++ll+ e ++lp+i+++ah++ + + + + G XP_013619374.1 23 VLAVDDNPTCLRKLEELLLRCKY-HVTKTMESKKALEMLREKSnmFDLVISDVEMPDTDGFKLLEIGLE--MDLPVIMLSAHSDYDSVMKGIIHG 114 799********************.***************999999******************985344..57********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l+Kp++ +el++ XP_013619374.1 115 ACDYLVKPVSLKELRN 130 *************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.9E-157 | 1 | 625 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 1.3E-34 | 20 | 143 | No hit | No description |
SuperFamily | SSF52172 | 9.53E-31 | 20 | 138 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 9.1E-27 | 21 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 39.181 | 22 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.4E-21 | 23 | 131 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.67E-20 | 45 | 135 | No hit | No description |
PROSITE profile | PS51294 | 13.888 | 199 | 258 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.23E-20 | 200 | 259 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.7E-29 | 200 | 259 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-25 | 202 | 255 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-9 | 204 | 254 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 626 aa Download sequence Send to blast |
MENMESVSNE EGRTDQFPVG MRVLAVDDNP TCLRKLEELL LRCKYHVTKT MESKKALEML 60 REKSNMFDLV ISDVEMPDTD GFKLLEIGLE MDLPVIMLSA HSDYDSVMKG IIHGACDYLV 120 KPVSLKELRN IWQHVVKKNI GSYKKIIAPS RHLLPTSEYA PSGSGKRKEK ADDSGDGDDD 180 SDRDEEEDGS EQDGDESSNR KKRRVVWSQE LHQKFVHAVQ QLGLDKAVPK KILDYMNIEG 240 LTRENVASHL QKYRLYLKKL DEGQQHNMSQ DAFGSRDSSY FHMAQLEGLR DYSSTRQLSS 300 SSLLTRSSLT KFHPSVYSSV NLQGSNSSSF IPPGHHQSSS SSANPFGTYH SPLLARSQNV 360 NLSPLEPLQF PRSKCSPYMG DFKGIADRGI SSSFLDSRMS FGSSSTSLPC ATSNNLMLQE 420 NFGVSDGNQS CLNGLSSFPS HHSWQGNLKT TTRFPSHSLP LNHAFGQDQM TCGGIGLGDY 480 NTSLVSADSH VGVLQCEPPF LGDFMQNMNT HKWEEQNCTM MNNTFGNVDY PLPVDNNMVF 540 RDNNATRSKG VDDSLMMSPI EDSATTLNSR ECVGNVTMMD PEMRSSTKLE NDLVDNQHDV 600 FDDIMNEMLK QDENNGMVSV AARFGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-21 | 200 | 260 | 3 | 63 | ARR10-B |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in young leaf tissue developing anthers, and siliques. {ECO:0000269|PubMed:15173562}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00057 | PBM | Transfer from AT5G58080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013619374.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB024029 | 6e-49 | AB024029.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L19. | |||
GenBank | CP002688 | 6e-49 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013619374.1 | 0.0 | PREDICTED: two-component response regulator ARR18 | ||||
Swissprot | Q9FGT7 | 0.0 | ARR18_ARATH; Two-component response regulator ARR18 | ||||
TrEMBL | A0A0D3ALA8 | 0.0 | A0A0D3ALA8_BRAOL; Two-component response regulator | ||||
STRING | Bo2g028820.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14282 | 18 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58080.1 | 0.0 | response regulator 18 |