PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013619236.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 705aa    MW: 79464.1 Da    PI: 6.4759
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013619236.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.68.7e-182879556
                    SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    ++++ +q+++Le++F+++++p+  +r +L ++l+L+ +q+k+WFqN+R++ k
  XP_013619236.1 28 HRHSIHQIQRLEAYFKECPHPDDMQRHKLGEELKLKPKQIKFWFQNKRTQAK 79
                    56788********************************************988 PP
2START128.77e-412244424206
                     HHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
           START   4 eeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                       a +e ++++  eep+W kss       ++en++++ ++++  k+   ++e +++++vv+m++ +lv  ++d+  +W + +     +a+t+ v+
  XP_013619236.1 224 VNAVTEIIRLIHIEEPMWIKSSiddrlviDQENYEKSFTNISHLKSpsARIESSKEVVVVPMDARNLVDMFFDTE-KWARIFStivnEAKTIHVL 317
                     6788999**********************************88888999**************************.**99999999999999998 PP

                     CTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS
           START  86 ssg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkg 174
                     +s      ++ ql++ +l  lsplvp R+f+++R+++q +++ wvi+dvS  + +   e   +  + ++pSg+li+ ++ng skvtw+ehv++++
  XP_013619236.1 318 ESMdtqrqNFSQLIYEQLHILSPLVPpREFMILRCCQQIEDDLWVIADVSCHHVNIDFE---SPTCSKRPSGCLIQALPNGLSKVTWMEHVEVNE 409
                     887788**********************************************9998764...566888*************************** PP

                     SXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 175 rlp.hwllrslvksglaegaktwvatlqrqcek 206
                     ++  h ++r l+  g   ga++w+ tl+r ce+
  XP_013619236.1 410 KVRtHRIYRDLLCGGFGYGARRWTVTLERMCER 442
                     **99***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.01E-16781IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-171283IPR009057Homeodomain-like
PROSITE profilePS5007114.9652181IPR001356Homeobox domain
SMARTSM003891.1E-142385IPR001356Homeobox domain
CDDcd000868.72E-152882No hitNo description
PfamPF000462.8E-152979IPR001356Homeobox domain
PROSITE profilePS5084839.183212445IPR002913START domain
SuperFamilySSF559611.51E-28213443No hitNo description
CDDcd088756.33E-92216441No hitNo description
SMARTSM002345.0E-26221442IPR002913START domain
PfamPF018525.9E-34224442IPR002913START domain
Gene3DG3DSA:3.30.530.204.2E-9263408IPR023393START-like domain
SuperFamilySSF559612.88E-10465669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MDSNHDSSSS NGLETSMSTT NGDNKIYHRH SIHQIQRLEA YFKECPHPDD MQRHKLGEEL  60
KLKPKQIKFW FQNKRTQAKA QSEKVFNASL RAENIRIRRE NEVIQEALKT VTCPPCGGPR  120
PGKEERELYL QKMRAHNAYL KRQREQISDF VNNNGGHSIP SVNSLASTSS NPHVSYGTSS  180
NPPLEPPSLE REPYTHEHIN NAQPPQHFQP LSQMEKMMMS QTMVNAVTEI IRLIHIEEPM  240
WIKSSIDDRL VIDQENYEKS FTNISHLKSP SARIESSKEV VVVPMDARNL VDMFFDTEKW  300
ARIFSTIVNE AKTIHVLESM DTQRQNFSQL IYEQLHILSP LVPPREFMIL RCCQQIEDDL  360
WVIADVSCHH VNIDFESPTC SKRPSGCLIQ ALPNGLSKVT WMEHVEVNEK VRTHRIYRDL  420
LCGGFGYGAR RWTVTLERMC ERLHLSSISV FPTTDLAGVV KTIEGRRSLM NLGERMLKNF  480
AWILKMSGNY DFSQLSETNS SGVRVSVRVN SEFGQPTGLI VCAASSLCLP LSPLEVYNFL  540
TNLEIRHQWD VLCHGYPAAE VAGFATGTDD KNRVNILQTT STTEDADMMI IQDSFRDALG  600
GMVVYAPVDL NTASAAVSGQ VNPSGIPILP SGFIISRDGH HFTSPDLEDG SDYSTSLLTV  660
AFQILVSGPT LSGDLQIEES TTTVNTLITS TLQRIKVMLN CNEGK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in anthers with highest levels in the tapetum and pollen grains, and chalazal end of the embryo sac. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-GCATTAAATGCGCA-3'. {ECO:0000269|PubMed:16778018}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013619236.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619236.10.0PREDICTED: homeobox-leucine zipper protein HDG9-like
RefseqXP_022551076.10.0homeobox-leucine zipper protein HDG9-like isoform X1
SwissprotQ9FFI00.0HDG9_ARATH; Homeobox-leucine zipper protein HDG9
TrEMBLA0A0D3AJH40.0A0A0D3AJH4_BRAOL; Uncharacterized protein
STRINGBo2g013570.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84681531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17320.10.0homeodomain GLABROUS 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]