PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013618608.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 424aa MW: 46102.1 Da PI: 7.1969 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.4 | 2.8e-09 | 99 | 121 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++lC+f+a G C+yGd+Ck+ H+ XP_013618608.1 99 EKLCKFWAD-GNCPYGDKCKYLHC 121 579******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 8.934 | 19 | 45 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.057 | 21 | 44 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-6 | 96 | 120 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.798 | 96 | 123 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.8E-6 | 98 | 122 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.3E-7 | 99 | 121 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-7 | 100 | 117 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:2.130.10.10 | 2.9E-16 | 118 | 235 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SuperFamily | SSF50978 | 3.85E-46 | 127 | 417 | IPR017986 | WD40-repeat-containing domain |
SMART | SM00320 | 1.0E-5 | 127 | 166 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 4.6E-4 | 130 | 166 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 13.015 | 134 | 175 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 21.384 | 134 | 336 | IPR017986 | WD40-repeat-containing domain |
PROSITE pattern | PS00678 | 0 | 153 | 167 | IPR019775 | WD40 repeat, conserved site |
PRINTS | PR00320 | 2.2E-6 | 153 | 167 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 1.3 | 206 | 243 | IPR001680 | WD40 repeat |
Gene3D | G3DSA:2.130.10.10 | 9.5E-32 | 236 | 417 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 0.02 | 250 | 287 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.047 | 255 | 287 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 11.979 | 257 | 296 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 2.2E-6 | 274 | 288 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 1.7E-4 | 290 | 327 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.0024 | 292 | 326 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 2.2E-6 | 314 | 328 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 14 | 331 | 374 | IPR001680 | WD40 repeat |
SMART | SM00320 | 4.6 | 377 | 414 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MDLDMNGGDK RVFQRLGGAS NQKVCFHWRA GRCNRYPCPF LHRESPPPAP FPGSSSSTNN 60 KRIADDDSGF AGSSHRRGPG SGNNTWGRFG GNRTVTKTEK LCKFWADGNC PYGDKCKYLH 120 CWSQGDSFSL LTQLDGHQKV VTGIALPSGS DKLYTASKDE TLRIWDCASG QCTGVLNPGG 180 EVGCMISEGP WLLVGMPNLV KAWNIQTNVD LSLTGPVGQV YSLVVGTDLL FAGTQDGSIL 240 VWRYNTATNC FDPAASLTGH TLAVVSLYVG ANRLYSGSMD NSIKVWSLDN LQCVQTLTEH 300 TSVVMSLICW DQFLLSCSLD NTVKIWAATQ GGNLEVTYTH KEEYGVLALC GVHDAEAKPV 360 LLCSCNDNSL HLYDLPSFTE RGKILAKQEI RSIQIGPGGI FFTGDGTGQV KVWKWSTQPT 420 AIHP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6g6m_A | 3e-21 | 131 | 417 | 8 | 323 | Tako8 |
6g6n_A | 3e-21 | 131 | 417 | 8 | 323 | Tako8 |
6g6n_B | 3e-21 | 131 | 417 | 8 | 323 | Tako8 |
6g6n_C | 3e-21 | 131 | 417 | 8 | 323 | Tako8 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013618608.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ252063 | 0.0 | AJ252063.1 Arabidopsis thaliana partial mRNA for zfwd1 protein (zfwd1 gene). | |||
GenBank | BT026122 | 0.0 | BT026122.1 Arabidopsis thaliana. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013618608.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 48 | ||||
Refseq | XP_013618612.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 48 | ||||
Swissprot | Q9FNZ2 | 0.0 | C3H48_ARATH; Zinc finger CCCH domain-containing protein 48 | ||||
TrEMBL | A0A078J4Y8 | 0.0 | A0A078J4Y8_BRANA; BnaC01g41630D protein | ||||
STRING | Bra013894.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1839 | 28 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25440.1 | 0.0 | zinc finger WD40 repeat protein 1 |