PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013618558.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 312aa    MW: 35439.9 Da    PI: 7.4562
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013618558.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY642.5e-20127186359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     Dg+ WrKYGqK++k+s++ rsYYrC+++    C ++k+ ++ +++p v  +tY g+H+++
  XP_013618558.1 127 DGFLWRKYGQKTIKQSKHQRSYYRCSYNidhACGARKHEQKIKDNPPVYRTTYFGHHTCN 186
                     9**************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.762120188IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-20122186IPR003657WRKY domain
SuperFamilySSF1182904.32E-20124187IPR003657WRKY domain
SMARTSM007741.7E-29125187IPR003657WRKY domain
PfamPF031061.6E-20127185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAKTNTLNSM NTSHEKAVQA ILYGQSCAKR LKLQLDHPIA GGRSVSNYDL AKSIVHCFSS  60
AISIFSDKPK SEDNLFSDLS SRDSSSSSSS SPSPSLPQRS HSKKRKNNNT NSSENWRHDS  120
PDPNYYDGFL WRKYGQKTIK QSKHQRSYYR CSYNIDHACG ARKHEQKIKD NPPVYRTTYF  180
GHHTCNINHK VHNQDAGLTT VGESVNDLEN SRMIWFGKDL DQEKESHTSG LSISVKHEEG  240
SIKEETMDQY RGITSHDKDC QNVIKENHQP SPSGSYTPPS SSGSEIDMFD SDLLVEDLDL  300
WDRYDMYNFG LR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-151271851068OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197105QRSHSKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013618558.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618558.10.0PREDICTED: probable WRKY transcription factor 38
SwissprotQ8GWF11e-117WRK38_ARATH; Probable WRKY transcription factor 38
TrEMBLA0A0D3AKH80.0A0A0D3AKH8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CPE90.0A0A3P6CPE9_BRAOL; Uncharacterized protein
STRINGBo2g024040.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136731727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.11e-102WRKY DNA-binding protein 38
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]
  3. Janda M, et al.
    Phospholipase D affects translocation of NPR1 to the nucleus in Arabidopsis thaliana.
    Front Plant Sci, 2015. 6: p. 59
    [PMID:25741350]