PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013618462.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 261aa    MW: 28746.7 Da    PI: 9.6433
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013618462.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001102124123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ Cgk F++   L  H  +H
  XP_013618462.1 102 YKCSVCGKAFPSYQALGGHKASH 124
                     9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.4E-4102124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.6E-13102125IPR007087Zinc finger, C2H2
SuperFamilySSF576671.14E-8102124No hitNo description
SMARTSM003550.0043102124IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.616102124IPR007087Zinc finger, C2H2
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
SuperFamilySSF576671.14E-8152179No hitNo description
PfamPF139124.6E-13157181IPR007087Zinc finger, C2H2
PROSITE profilePS501579.078157179IPR007087Zinc finger, C2H2
SMARTSM003550.15157179IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280159179IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MALEAMNSPS FTVRKDRIEA TEDDLMNDAV FMEPWLKRKR SKRQRSRSPS PSTSSSPPRS  60
RRPKSESQDL TEEEYLALCL LKLAKDKHSP RPQPQDSTKL SYKCSVCGKA FPSYQALGGH  120
KASHRIKPLT ADNSTSPIIA GEKHHSSATV PPSGKIHECS ICRKVFPTGQ ALGGHKRCHY  180
EGNLGGGSKT ISQSGSVSST VSEDRSNHVL IDLNLPALPE LSLHHNPVVD EEILSPLTGK  240
KPLLLTDRDQ VIKKEDLSLR I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13542LKRKRSKR
24146KRQRSR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, radicles, cotyledons, hypocotyls, leaf veins, stems, sepals, petals, stamens, placenta, funiculi and maturated seeds. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:20619483}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. Acts as a negative regulator of abscisic acid (ABA) signaling during seed germination. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. May act as a positive regulator of leaf senescence. Has been identified as a suppressor of the deficiency of yeast snf4 mutant to grow on non-fermentable carbon source. {ECO:0000269|PubMed:10929106, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415, ECO:0000269|PubMed:22709441}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013618462.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, salt, cold, dehydration and the monovalent and divalent cations Li(+), Na(+), K(+), Cs(+), Ca(2+) and Mg(2+). {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618462.10.0PREDICTED: zinc finger protein AZF2-like
RefseqXP_022550878.10.0zinc finger protein AZF2-like
SwissprotQ9SSW21e-102AZF2_ARATH; Zinc finger protein AZF2
TrEMBLA0A0D3AC980.0A0A0D3AC98_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FHW40.0A0A3P6FHW4_BRAOL; Uncharacterized protein
STRINGBo1g113530.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102721829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.27e-86zinc-finger protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]