PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013618249.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 268aa    MW: 30790.8 Da    PI: 9.8813
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013618249.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027101124123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     +kC++C ksF+    L +H  t H
  XP_013618249.1 101 WKCGYCRKSFNEEKFLDQHFATrH 124
                     58*****************88877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.517101124IPR007087Zinc finger, C2H2
PROSITE patternPS000280103124IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGRLKESSPV IPLLLLLFPL LLHHSLTKVL GESESTREGN AQEIHCSRER SRAAWQIIQD  60
YLTPFVERER YQIPNKCRLH PDNDLYRDQE QHKVHVDVYE WKCGYCRKSF NEEKFLDQHF  120
ATRHYNLLNT TGTKCLADLC GALHCDFVLM SSKKGKIKCN PAAAAKNRHL CESLANTCFP  180
VSQGPAASRL HEHFLRQFCD AHTCTGKNKP FPRGGKKKSG VFYLAVSILT LMLLPLFYLL  240
VFLHQREKRT GTQVLRRIVK TGKKTKPS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013618249.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618249.10.0PREDICTED: uncharacterized protein LOC106324810
RefseqXP_022571272.10.0uncharacterized protein LOC111213729
TrEMBLA0A3P6D8780.0A0A3P6D878_BRAOL; Uncharacterized protein (Fragment)
STRINGBo2g165480.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43711618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.11e-144C2H2-like zinc finger protein