PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013618223.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 337aa MW: 37478.6 Da PI: 10.1159

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013618223.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.1	5.8e-31	270	327	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ ++++++++tYegeHnh+ XP_013618223.1 270 DEYSWRKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERCVDETSMLIVTYEGEHNHS 327 9***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	8.8E-15	229	266	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	2.5E-33	256	327	IPR003657	WRKY domain
PROSITE profile	PS50811	29.241	263	329	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-26	266	327	IPR003657	WRKY domain
SMART	SM00774	3.5E-37	268	328	IPR003657	WRKY domain
Pfam	PF03106	1.7E-26	270	326	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MEEVEAANKA AVESCHGVLN LLSQQTNDPK SIMFETREAV SKFRSVSSLL SSGSGQRKIK 60 KHNNNYYKLR SLQLPQHIFL ESPVFSNNAI TGCIPILAPK PLRIIPPAAP SYSEQRQGHP 120 PPMMLNQKMC VDKSFLELKP PSSHQSPYQF FPNHQQGVYS RSNSGLNLKF DGPCGGSCYS 180 PTVSNGSRSF VSSLSMDTSV ADYNRNSFHL IGLPQGSDHI SQHSRRTSCS GSLKCGGRSK 240 CHCSKKRKLR VRRSIKVPAI SNKIADIPPD EYSWRKYGQK PIKGSPHPRG YYKCSSLRGC 300 PARKHVERCV DETSMLIVTY EGEHNHSRIL SSQSAQT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-20	256	327	2	72	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013618223.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM593168	0.0	KM593168.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY146) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013618223.1	0.0	PREDICTED: probable WRKY transcription factor 74
Swissprot	Q93WU6	0.0	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	A0A0A7RE94	0.0	A0A0A7RE94_BRAOC; WRKY146 protein
TrEMBL	A0A0D3AX49	0.0	A0A0D3AX49_BRAOL; Uncharacterized protein
STRING	Bo2g151880.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3885	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	0.0	WRKY DNA-binding protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]