PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013618084.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 183aa MW: 21202.3 Da PI: 9.4658 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 60.1 | 5.7e-19 | 45 | 137 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 F lye+++d+++++++sws++g+sf+ +++++f ++vLpk+ ++ + FvR n+Y F+kv+++e+ e++h++F +gk el + XP_013618084.1 45 FADVLYEMVDDPSTDSIVSWSQDGSSFIFWNQDKFCSDVLPKFGLSTSPTFFVRLTNIYLFRKVEESEH--------CEYAHDYFVRGKPELTVE 131 77889*************************************9999*******************9995........6***************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+ + XP_013618084.1 132 IERQFK 137 **9865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 7.8E-21 | 41 | 135 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.9E-8 | 45 | 68 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.12E-18 | 45 | 134 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.6E-23 | 45 | 135 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.4E-19 | 45 | 135 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.9E-8 | 96 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 183 aa Download sequence Send to blast |
MAEKVSARGS SSSSPKVIPM ARKVKEYYRY PAMEAFHKGC VRRYFADVLY EMVDDPSTDS 60 IVSWSQDGSS FIFWNQDKFC SDVLPKFGLS TSPTFFVRLT NIYLFRKVEE SEHCEYAHDY 120 FVRGKPELTV EIERQFKERG APIKLAIKPH EPAYKESRER IRAFMLAKKA ARSLSLKEMG 180 TNQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 5e-14 | 45 | 135 | 29 | 129 | Heat shock factor protein 1 |
5d5v_B | 5e-14 | 45 | 135 | 29 | 129 | Heat shock factor protein 1 |
5d5v_D | 5e-14 | 45 | 135 | 29 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bol.1229 | 0.0 | leaf |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013618084.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013618084.1 | 1e-135 | PREDICTED: heat stress transcription factor B-4b-like | ||||
TrEMBL | A0A0D3AYH6 | 1e-134 | A0A0D3AYH6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6DK38 | 1e-134 | A0A3P6DK38_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g165560.1 | 1e-134 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM965 | 28 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G51910.1 | 4e-19 | heat shock transcription factor A7A |