PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013618052.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 290aa    MW: 31763.3 Da    PI: 6.8562
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013618052.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.61.5e-17216251134
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++Cgt++  Tp++Rrgp+g++tLCnaCGl+++ kg
  XP_013618052.1 216 CRHCGTSEksTPMMRRGPEGPRTLCNACGLMWANKG 251
                     *********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.13470105IPR010399Tify domain
SMARTSM009791.9E-1170105IPR010399Tify domain
PfamPF062009.5E-1173104IPR010399Tify domain
PROSITE profilePS5101713.066140182IPR010402CCT domain
PfamPF062031.5E-15140182IPR010402CCT domain
SMARTSM004017.1E-11210263IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.222210258IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-13213269No hitNo description
Gene3DG3DSA:3.30.50.101.2E-15215257IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.1E-15216251IPR000679Zinc finger, GATA-type
CDDcd002029.33E-15216258No hitNo description
PROSITE patternPS003440216243IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDDDLHGNNG GMHNGGGVQD PNHSMHVQYD HRGMMDEQHA DDVMNEGLEA DIPSHLGNTS  60
DHRGEVVDRG SENGDQLTLS FQGQVYVFDR VLPEKVQAVL LLLGGREVPN TVPTTVGSPH  120
QNNRVLGLSG TPQRFSAPQR QASLLRFREK RKGRNFDKTI RYTVRKEVAL RMQRKKGQFT  180
SAKSSNEDSA SNGSDWGSGQ SWALEGTETQ KPEALCRHCG TSEKSTPMMR RGPEGPRTLC  240
NACGLMWANK GALRDLSKAP PPPTAQNLPA NKIDESILEA ELAGDISNSQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013618052.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618052.10.0PREDICTED: GATA transcription factor 24-like isoform X1
SwissprotQ8GXL71e-164GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A078GSH80.0A0A078GSH8_BRANA; BnaC01g32210D protein
STRINGBo1g108240.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.11e-161ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]