PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013617951.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 267aa    MW: 29557.7 Da    PI: 5.661
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013617951.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00024320623
                    TTEEESSHHHHHHHHHHT CS
         zf-C2H2  6 CgksFsrksnLkrHirtH 23
                    C ksFs+ s+L+ H+++H
  XP_013617951.1  3 CEKSFSNGSTLRGHMMSH 20
                    ****************99 PP
2zf-C2H214.88.5e-05243265123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ Cg+ F +   L  H++tH
  XP_013617951.1 243 HQCGVCGREFESGQALGGHMKTH 265
                     79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355110120IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.95E-8190265No hitNo description
PROSITE profilePS5015710.554192219IPR007087Zinc finger, C2H2
SMARTSM003550.055192214IPR015880Zinc finger, C2H2-like
PfamPF139123.9E-11193215IPR007087Zinc finger, C2H2
PROSITE patternPS000280194214IPR007087Zinc finger, C2H2
PfamPF139121.5E-10242266IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.138243267IPR007087Zinc finger, C2H2
SMARTSM003550.021243265IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280245265IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MRCEKSFSNG STLRGHMMSH SLIRSAPNAE SASGSTLPSL ETSNNGTVLI RSNHTSEVGE  60
PDLKRDEGAQ KIKGKRKMIV DEADSTGSGS PLTAVEEAGL ILVAMSKGQR PENSQNWNAI  120
DRLLATPNGK EEYYQKDLDS DDDNKEVKYK SVAELLTQNV ETQTEDSDED DEVNDADETN  180
LVTREKKCKK EFMCDVCGKV FGSYQALGGH RTSHKCKRLK ICDKNDQDGE LVPNKKNDQD  240
RRHQCGVCGR EFESGQALGG HMKTHYI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013617951.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325420.0AC232542.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005L20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013617951.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A0D3AY720.0A0A0D3AY72_BRAOL; Uncharacterized protein
STRINGBo2g161550.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141711523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61470.15e-40C2H2-like zinc finger protein