PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013617877.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 270aa MW: 29921.2 Da PI: 4.3295

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013617877.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	36.6	5.6e-12	21	63	2	44
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 + e k +r v +skRr++++ K EL+ L +a++av + s+ + XP_013617877.1 21 KCETKEQRAVAYSKRRKTLFSKSAELCCLSGANIAVFVTSPGD 63 568899********************************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.8E-17	12	71	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.918	12	72	IPR002100	Transcription factor, MADS-box
CDD	cd00266	8.87E-21	13	76	No hit	No description
SuperFamily	SSF55455	7.19E-16	14	103	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.4E-7	14	34	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-10	23	64	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.4E-7	34	49	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.4E-7	49	70	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MFLDWSTMAR GGTKRKIEIK KCETKEQRAV AYSKRRKTLF SKSAELCCLS GANIAVFVTS 60 PGDKANVASS FSGHASATEI VDCYFKGTLP PKISVPESKL GLWWTDPDLY SSCDDLSQLD 120 VIEDLIKRTK KDLMDCLEKQ ENSRVCCFDS RQNPNSSSQA VTMYQNTSKP LDGSSQVIYG 180 GESSSGQPRY LVNKDVGNCL WETEKENNLI MSLPQETEQT QSITNVEGGD EGQSFWDELY 240 NEDGFGLNNG EDDVMIDIGE FLNDIESGGS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013617877.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013617877.1	0.0	PREDICTED: uncharacterized protein LOC106324460
TrEMBL	A0A0D3AX69	0.0	A0A0D3AX69_BRAOL; Uncharacterized protein
STRING	Bo2g155050.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6395	14	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G48150.1	6e-75	M-type_MADS family protein