PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013617041.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 373aa    MW: 41666.7 Da    PI: 7.5655
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013617041.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.82.9e-114167127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C+++ rtG C++G++C+F+H++
  XP_013617041.1 41 PGEPDCSYYIRTGLCRFGSTCRFNHPR 67
                    5789*********************96 PP
2zf-CCCH37.73.5e-1288112327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C ++++tGtCk+G +CkF+H++
  XP_013617041.1  88 QPECEYYLKTGTCKFGVTCKFHHPR 112
                     799********************96 PP
3zf-CCCH382.8e-12134158327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C +f+rtG+Ck+G++CkF+H++
  XP_013617041.1 134 EVDCAYFLRTGHCKFGATCKFNHPQ 158
                     578********************97 PP
4zf-CCCH37.24.8e-12251277127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+f+++tG Ck+G  CkF+H++
  XP_013617041.1 251 PGQPECQFYMKTGDCKFGTVCKFHHPR 277
                     5789*********************96 PP
5zf-CCCH375.8e-12297323127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C f++r+G+Ck+G++CkF+H++
  XP_013617041.1 297 PGEPVCVFYSRYGICKFGPSCKFNHPM 323
                     57899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.0E-54067IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6994068IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-84267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-64568IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-44667IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.10885113IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-585112IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-988112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-689114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-491112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99131159IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-6131158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6134160IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-10134158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4137157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22250278IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5250277IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-8252277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-6254279IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4256278IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244296324IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-7296323IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-9298323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6300324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4301322IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MDFNAGVPMS SLSPLMNQEA MWQMNLSSDE TMETGSYPER PGEPDCSYYI RTGLCRFGST  60
CRFNHPRDRE LVIATARMRG EYPERIGQPE CEYYLKTGTC KFGVTCKFHH PRNKAGIAGR  120
VSLNMLGYPL RSNEVDCAYF LRTGHCKFGA TCKFNHPQPQ PTTSLMVPTS GQQQSYPWSR  180
ASFIASPRWQ DPSGFTPLMM PQGVVWNPYS GQVGSVSPSG TGNEHSNYRN MQKNESGSSV  240
QPSENVFPER PGQPECQFYM KTGDCKFGTV CKFHHPRDRQ PPSPDCLLSP IGLPLRPGEP  300
VCVFYSRYGI CKFGPSCKFN HPMEVFAYDN TASETDEVVE TSGGHSRRVS VSETRQATTT  360
TSGQDTPIDT QQQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013617041.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1179780.0AK117978.1 Arabidopsis thaliana At3g02830 mRNA for putative zinc finger protein 1 (zfn1), complete cds, clone: RAFL19-18-D10.
GenBankBT0259660.0BT025966.1 Arabidopsis thaliana At3g02830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013617041.10.0PREDICTED: zinc finger CCCH domain-containing protein 33-like isoform X1
SwissprotQ8GXX70.0C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A0D3AFY60.0A0A0D3AFY6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FMJ40.0A0A3P6FMJ4_BRAOL; Uncharacterized protein
STRINGBo1g155120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]