PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013616940.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 133aa    MW: 16068.8 Da    PI: 4.5601
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013616940.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM37.38.4e-1226102472
             NAM   4 GfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgk 72 
                     G+ F+P+d+el++++L +k+e+         e+e++i   ++y+ +Pw L++ +++   +++ew++F++r + + ++ 
  XP_013616940.1  26 GLYFDPEDQELIKYHLLPKLETYLqpkskdEECEDFIVMKNVYDKQPWLLDH-TNHplfRKNEWFYFVTRTQVSVKNI 102
                     99*****************987554455545566689999**********84.222345889*****99998776543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100512.59323133IPR003441NAC domain
SuperFamilySSF1019417.19E-1224106IPR003441NAC domain
PfamPF023651.7E-626103IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MSNNYEDGGV YYDPDETMFN NDEDGGLYFD PEDQELIKYH LLPKLETYLQ PKSKDEECED  60
FIVMKNVYDK QPWLLDHTNH PLFRKNEWFY FVTRTQVSVK NIGRGRNSKR RIAGDNDEAE  120
ERRRYFCCCS WEQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013616940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616940.15e-97PREDICTED: uncharacterized protein LOC106323346
TrEMBLA0A0D3AL394e-82A0A0D3AL39_BRAOL; Uncharacterized protein
STRINGBo2g027140.17e-83(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.16e-13NAC domain containing protein 88