PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013616912.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 373aa    MW: 42513.9 Da    PI: 7.6549
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013616912.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.21.7e-07215237123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C++Cgk F+r  nL+ H+r H
  XP_013616912.1 215 HYCQICGKGFKRDANLRMHMRAH 237
                     68*******************99 PP
2zf-C2H213.10.0003337352621
                     TTEEESSHHHHHHHHH CS
         zf-C2H2   6 CgksFsrksnLkrHir 21 
                     Cg++Fsrk+ L++H +
  XP_013616912.1 337 CGTTFSRKDKLMSHVS 352
                     **************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.72E-6214240No hitNo description
Gene3DG3DSA:3.30.160.603.6E-6215242IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0028215237IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.632215242IPR007087Zinc finger, C2H2
PROSITE patternPS000280217237IPR007087Zinc finger, C2H2
SMARTSM00355230267300IPR015880Zinc finger, C2H2-like
SMARTSM0035555305327IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MNQEDHMNQG EHIMNNGEGS MPCFSETTIT SSNHLYPMTA ATKSSEEDHS ISLSLLLNLS  60
TIQDKVHHIQ SLVSFFMISN NNQSSESTSS LAVANIESLV QEIVTAATSM MLTCQQRHIP  120
SNNNSNFNNE QTVDAIVMKY STQETEPDHD FTPESSTNFL GVQERGNISF IDHNLDWHGT  180
QSINPKKDQH RFKTRPGNYE VLELGADDLL AKFTHYCQIC GKGFKRDANL RMHMRAHGDE  240
YKTREALISP TSHDKKVEGH SLMTHYYSCP QHGCRWNQRH EKFQPLKSVI CAKNHYKRSH  300
CPKMYMCRRC NVKHFSVLSD LRTHEKHCGD IKWVCSCGTT FSRKDKLMSH VSLFVGHSPV  360
HGPPPQQRPI ITI
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013616912.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616912.10.0PREDICTED: zinc finger protein STOP1 homolog
SwissprotQ0WT240.0STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A3P6DB280.0A0A3P6DB28_BRAOL; Uncharacterized protein
STRINGBo2g024540.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-177C2H2 family protein