PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013616531.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 330aa MW: 36534.7 Da PI: 5.9113 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90 | 1.9e-28 | 152 | 212 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dD ++WrKYGqK++ g+++prsYYrCt++ +C+++k+v+rs++dp++++ tY+g+H+++ XP_013616531.1 152 DDVFSWRKYGQKDILGAKYPRSYYRCTFRntqNCWATKQVQRSDDDPTIFDLTYKGKHTCS 212 8**************************998889**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 21.677 | 146 | 209 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-27 | 147 | 212 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.12E-24 | 150 | 212 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.4E-39 | 151 | 213 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-25 | 152 | 211 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MDMSNWEQKN LLSELVHGLK AAKQLQAELG TAPSPPPPSL SSSSLCMTTE MRETLLHQIV 60 SSYEKAILML NGSSVVHSQM AEMVNLAANP VANTGKVPES PTSINGSPRS EEFIDGGGSK 120 DYNLSSKKRK MLPKWTEQVR ISPERGLEGP HDDVFSWRKY GQKDILGAKY PRSYYRCTFR 180 NTQNCWATKQ VQRSDDDPTI FDLTYKGKHT CSQGIPPRDK PDTTPNTTLI NYQNDLLANL 240 RTNLSVRTNG IESDGFSFPV TPPFYSYESD FGNGGGTFCD MGNYSRPSDF TGLVSTNTST 300 GSSPIFDVDF QFDPTAEINT GLHTFLHDSV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-18 | 152 | 211 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013616531.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF442396 | 1e-106 | AF442396.1 Arabidopsis thaliana WRKY transcription factor 41 (WRKY41) mRNA, complete cds. | |||
GenBank | AY133686 | 1e-106 | AY133686.1 Arabidopsis thaliana clone C103116 (D) unknown protein (At4g11070) mRNA, complete cds. | |||
GenBank | BT001107 | 1e-106 | BT001107.1 Arabidopsis thaliana clone C103116 (A) putative WRKY family transcription factor (At4g11070) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013616531.1 | 0.0 | PREDICTED: probable WRKY transcription factor 41 | ||||
Refseq | XP_013686534.1 | 0.0 | probable WRKY transcription factor 41 | ||||
Swissprot | Q8H0Y8 | 1e-152 | WRK41_ARATH; Probable WRKY transcription factor 41 | ||||
TrEMBL | A0A078JI12 | 0.0 | A0A078JI12_BRANA; BnaCnng45760D protein | ||||
TrEMBL | A0A0D3AT35 | 0.0 | A0A0D3AT35_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6DR48 | 0.0 | A0A3P6DR48_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g109030.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1933 | 27 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 1e-154 | WRKY family protein |
Publications ? help Back to Top | |||
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