PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013616107.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 308aa MW: 34312.4 Da PI: 4.9022 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.6 | 2.5e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ v+++G W+t +++ g++R++k+c++rw +yl XP_013616107.1 14 KGAWTPEEDQRLIAFVQLHGESGWRTLPEKAGLKRCGKSCRLRWANYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.1 | 6.4e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +T+eEd+ ++++++++G++ W++Ia + gRt++++k++w++ XP_013616107.1 67 RGEFTPEEDDTIIKLHALMGNK-WAAIATSLA-GRTDNEIKNYWNTN 111 899*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.634 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.81E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.277 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.46E-11 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-26 | 69 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MVRTPCCKEE GIRKGAWTPE EDQRLIAFVQ LHGESGWRTL PEKAGLKRCG KSCRLRWANY 60 LKPDIKRGEF TPEEDDTIIK LHALMGNKWA AIATSLAGRT DNEIKNYWNT NLKKRLTQKG 120 LDPTTHKPIN PTDQTGFEPK VHKLGSSSCA RLLNHVARKY AGDLNRDLLT GIIIGNSSNI 180 AEGSQNSVEV DSPTESSTFT LLNKAAARSS AVTSFLTNNM SSSSGLSNNC TLADNLDLFF 240 SNEEISDMSM NVDNVCIMEE LRDILSYGGA DAGDVKDLPE FDVTDGMEFL GSWNVEDDLD 300 LENYYWFR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-27 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in trichomes. {ECO:0000269|PubMed:23115560}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in tryptophan gene activation and in indole-3-acetic acid (IAA) and indolic glucosinolates (IG) biosynthesis. Acts as a direct transcriptional activator of both Trp synthesis genes and Trp secondary metabolism genes. {ECO:0000269|PubMed:15579661, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862, ECO:0000269|PubMed:9576939}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013616107.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by herbivory. {ECO:0000269|PubMed:23943862}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013616102.1 | 0.0 | PREDICTED: transcription factor MYB34-like | ||||
Refseq | XP_013616103.1 | 0.0 | PREDICTED: transcription factor MYB34-like | ||||
Refseq | XP_013616104.1 | 0.0 | PREDICTED: transcription factor MYB34-like | ||||
Refseq | XP_013616105.1 | 0.0 | PREDICTED: transcription factor MYB34-like | ||||
Refseq | XP_013616107.1 | 0.0 | PREDICTED: transcription factor MYB34-like | ||||
Refseq | XP_013616108.1 | 0.0 | PREDICTED: transcription factor MYB34-like | ||||
Swissprot | O64399 | 1e-146 | MYB34_ARATH; Transcription factor MYB34 | ||||
TrEMBL | A0A0D3AY34 | 0.0 | A0A0D3AY34_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g161170.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60890.1 | 1e-142 | myb domain protein 34 |