PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013616020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ZF-HD | ||||||||
Protein Properties | Length: 261aa MW: 28778.2 Da PI: 9.0132 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.1 | 1.8e-32 | 35 | 90 | 2 | 58 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++vrY+eClkNhAa++Gg + DGCgEfmps geegt +al+CaAC+CHRnFHR+ev+ XP_013616020.1 35 TTVRYRECLKNHAANVGGSVQDGCGEFMPS-GEEGTLEALRCAACDCHRNFHRKEVD 90 689**************************9.999********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 4.0E-25 | 36 | 90 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 9.7E-30 | 37 | 89 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.2E-30 | 38 | 89 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.083 | 39 | 88 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-31 | 181 | 252 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.63E-20 | 181 | 252 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 5.0E-30 | 191 | 247 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MDMRSHEMIE RRSDDNGNND NHQSKSSSIS AAAKTTVRYR ECLKNHAANV GGSVQDGCGE 60 FMPSGEEGTL EALRCAACDC HRNFHRKEVD GVGSSAHHPR HHHQYGGGGG RRPPPPNMML 120 NPLMLPPPSN YAQMHHHKYG VSPPSGMVTP MSVAYGGGGG AESSSEDLNM YGQSSGEHGG 180 GATAGQMGFS KKRFRTKFTT EQKERMMEFA EKLGWRMNKQ DEEELKRFCN EIGVKRQVFK 240 VWMHNNKSNA KKPTTTTPGT L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-22 | 190 | 249 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013616020.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353274 | 1e-153 | AK353274.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-B06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013616018.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 5-like isoform X4 | ||||
Swissprot | Q9FRL5 | 1e-103 | ZHD5_ARATH; Zinc-finger homeodomain protein 5 | ||||
TrEMBL | A0A0D3AQM4 | 0.0 | A0A0D3AQM4_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g082590.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75240.1 | 1e-102 | homeobox protein 33 |