PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013616018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 289aa MW: 31833.8 Da PI: 9.842 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.9 | 2.1e-32 | 63 | 118 | 2 | 58 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++vrY+eClkNhAa++Gg + DGCgEfmps geegt +al+CaAC+CHRnFHR+ev+ XP_013616018.1 63 TTVRYRECLKNHAANVGGSVQDGCGEFMPS-GEEGTLEALRCAACDCHRNFHRKEVD 118 689**************************9.999********************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 3.0E-25 | 64 | 118 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.1E-29 | 65 | 117 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.9E-30 | 66 | 117 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.083 | 67 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-31 | 209 | 280 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.29E-20 | 209 | 280 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 6.0E-30 | 219 | 275 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 289 aa Download sequence Send to blast |
MSLRSSSVPP ARTGSYLVAL ILINSRRKMD MRSHEMIERR SDDNGNNDNH QSKSSSISAA 60 AKTTVRYREC LKNHAANVGG SVQDGCGEFM PSGEEGTLEA LRCAACDCHR NFHRKEVDGV 120 GSSAHHPRHH HQYGGGGGRR PPPPNMMLNP LMLPPPSNYA QMHHHKYGVS PPSGMVTPMS 180 VAYGGGGGAE SSSEDLNMYG QSSGEHGGGA TAGQMGFSKK RFRTKFTTEQ KERMMEFAEK 240 LGWRMNKQDE EELKRFCNEI GVKRQVFKVW MHNNKSNAKK PTTTTPGTL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 5e-22 | 218 | 277 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013616018.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK353274 | 1e-153 | AK353274.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-B06. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013616018.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 5-like isoform X4 | ||||
Swissprot | Q9FRL5 | 1e-103 | ZHD5_ARATH; Zinc-finger homeodomain protein 5 | ||||
TrEMBL | A0A0D3AQM4 | 0.0 | A0A0D3AQM4_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g082590.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75240.1 | 1e-102 | homeobox protein 33 |