PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013615677.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HSF | ||||||||
Protein Properties | Length: 123aa MW: 14507.6 Da PI: 10.4084 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 80.6 | 2.5e-25 | 3 | 71 | 25 | 102 |
SSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 25 gnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102 g+sfvv+d ++f++ +Lp++Fkhsnf+SF+RQLn+YgF+k++ e+ weF+++ F g+++ll++ikr++s XP_013615677.1 3 GTSFVVWDLHSFSEFLLPRHFKHSNFSSFIRQLNTYGFRKIEAER---------WEFANEGFLLGQRHLLKSIKRRAS 71 79****************************************999.........*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 5.1E-25 | 1 | 69 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 8.57E-22 | 2 | 69 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.4E-24 | 2 | 69 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.9E-21 | 3 | 69 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.4E-10 | 18 | 30 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 19 | 43 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.4E-10 | 31 | 43 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
RGGTSFVVWD LHSFSEFLLP RHFKHSNFSS FIRQLNTYGF RKIEAERWEF ANEGFLLGQR 60 HLLKSIKRRA SFALSSSSIQ DPCIELRKEK QLLLMELVSL RQQQETNKSY IKAMEQRIEG 120 AEK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 8e-15 | 3 | 71 | 43 | 122 | Heat shock factor protein 1 |
5d5u_B | 9e-15 | 3 | 71 | 52 | 131 | Heat shock factor protein 1 |
5d5v_B | 9e-15 | 3 | 71 | 52 | 131 | Heat shock factor protein 1 |
5d5v_D | 9e-15 | 3 | 71 | 52 | 131 | Heat shock factor protein 1 |
5hdg_A | 7e-15 | 3 | 71 | 33 | 112 | Heat shock factor protein 1 |
5hdn_A | 7e-15 | 3 | 71 | 33 | 112 | Heat shock factor protein 1 |
5hdn_B | 7e-15 | 3 | 71 | 33 | 112 | Heat shock factor protein 1 |
5hdn_C | 7e-15 | 3 | 71 | 33 | 112 | Heat shock factor protein 1 |
5hdn_D | 7e-15 | 3 | 71 | 33 | 112 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 62 | 68 | LKSIKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013615677.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL049711 | 9e-32 | AL049711.3 Arabidopsis thaliana DNA chromosome 3, BAC clone F4F15. | |||
GenBank | CP002686 | 9e-32 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013596160.1 | 3e-84 | PREDICTED: heat stress transcription factor A-7a-like | ||||
Refseq | XP_013615677.1 | 1e-85 | PREDICTED: heat stress transcription factor A-7a-like, partial | ||||
Refseq | XP_013737123.1 | 3e-84 | heat stress transcription factor A-7a-like | ||||
Swissprot | Q9SV12 | 1e-68 | HFA7A_ARATH; Heat stress transcription factor A-7a | ||||
TrEMBL | A0A3P6E666 | 4e-83 | A0A3P6E666_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g101300.1 | 1e-83 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1256 | 28 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51910.1 | 5e-71 | heat shock transcription factor A7A |
Publications ? help Back to Top | |||
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