PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013615227.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 158aa MW: 18384.9 Da PI: 8.3537 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 49.2 | 1.4e-15 | 41 | 127 | 8 | 102 |
HHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 8 eiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102 ++++d+++++++sws++g+sf+ +d+++f ++vLpk+ ++ + F R n+Y F+kv+ +e+ e++h++F +gk el +i+r+ + XP_013615227.1 41 RMVDDPSTDSIVSWSQDGSSFIFWDQDKFCSDVLPKFGLSTSPTFFGRLKNIYRFRKVEVSEH--------CEYAHDYFVRGKPELTVEIERQFK 127 69**********************************88888888899999*********9995........6*******************9865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.9E-13 | 33 | 125 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 8.7E-20 | 41 | 125 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 5.2E-16 | 41 | 125 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 4.62E-15 | 41 | 124 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 158 aa Download sequence Send to blast |
MDSSSSSQGL PVAGRVKEYY RYPALEAFHK GCVRRYFADA RMVDDPSTDS IVSWSQDGSS 60 FIFWDQDKFC SDVLPKFGLS TSPTFFGRLK NIYRFRKVEV SEHCEYAHDY FVRGKPELTV 120 EIERQFKERG APIKLAKLFR FVECLGSIEK CIDIYCRR |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bol.1229 | 1e-139 | leaf |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013615227.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013615227.1 | 1e-114 | PREDICTED: heat stress transcription factor A-4a-like | ||||
TrEMBL | A0A0D2ZVL9 | 1e-113 | A0A0D2ZVL9_BRAOL; Uncharacterized protein | ||||
STRING | Bo01835s010.1 | 1e-114 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM965 | 28 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G17750.1 | 2e-17 | heat shock factor 1 |