PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013614723.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 507aa    MW: 56171.1 Da    PI: 5.8099
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013614723.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.7e-12341386454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h  +Er RR+++N++f  Lr  +P+       K++Ka+ L  A+ YIk+L
  XP_013614723.1 341 NHVHAERLRREKLNQRFYALRATVPNV-----SKMDKASLLGDAISYIKEL 386
                     6999**********************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-4839221IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.876337386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-17340406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.38E-13340387No hitNo description
Gene3DG3DSA:4.10.280.101.0E-15341407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-9341386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-14343392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005509Molecular Functioncalcium ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MDSLNTNVTA TMIDALMSSP SSGFWPPLSP ANPSPDSALQ KRLQAVLNGT HEAWTYAIFW  60
TPSYYDYSGE SVLKWGDGIY KGEEADNTRR KRRRMTVAER EHWSLILPEL SSMTSDEDLP  120
VIDGEDDVEV SDTEWFYMVS MTVSFGSETG LPGKAFATYK PVWVTGSDHI LASGCERAKK  180
GGDSGLQTIV CIPLDNGVLE LGSTVEIKQN PDLFNKIRVV FSFEGSRDFS GDPNSNSFQP  240
FSTHLENGGG SSTVTVNPNR YPNPVYPQTV NFATSTLERA LHSPNQNYPE QIPIDDGELL  300
HSAGDIDGSD HSDIESTVVP GNKQKKKRGR KLANGRKEPL NHVHAERLRR EKLNQRFYAL  360
RATVPNVSKM DKASLLGDAI SYIKELKSRA ENAESERNAI QIQLNKLKEE MAGRNAVCRG  420
GKNASEIETV NIDVKILGCD AMVRLESSKR NHPAARLMNA FMDLDVELNH ASISVIHDLM  480
IQQATVKMGS IMYTQDQLQA MLVSKIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-43362236194Transcription factor MYC3
4rqw_B8e-43362236194Transcription factor MYC3
4rs9_A8e-43362236194Transcription factor MYC3
4yz6_A8e-43362236194Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18993RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00547DAPTransfer from AT5G46830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013614723.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614723.10.0PREDICTED: transcription factor bHLH28-like
SwissprotQ9LUK71e-163BH028_ARATH; Transcription factor bHLH28
TrEMBLA0A0D2ZTS50.0A0A0D2ZTS5_BRAOL; Uncharacterized protein
STRINGBo01130s010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139531624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.11e-159NACL-inducible gene 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chen X,Huang H,Qi T,Liu B,Song S
    New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
    Plant Signal Behav, 2016. 11(2): p. e1135280
    [PMID:26829586]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Song S, et al.
    MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses.
    Plant Cell Physiol., 2017. 58(10): p. 1752-1763
    [PMID:29017003]
  5. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]