PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013614696.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 585aa    MW: 65503.2 Da    PI: 9.6237
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013614696.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.4e-07483532147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   XP_013614696.1 483 RRPFSVAEVEALVQAVERLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 532
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.864478537IPR017930Myb domain
SMARTSM007177.0E-7482535IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-10483533IPR009057Homeodomain-like
SuperFamilySSF466891.89E-15484565IPR009057Homeodomain-like
CDDcd116601.84E-16484534No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MVLQTRLDYG FNGYEVPPTP RAARSPRKSA FKKKSENNQI SSSFDLLAAV DGKLLLESGG  60
VSSSSSNNAS GDNNEDRCGG KKEPDDQMVV EETHCDHHHD NNAERSFFVS EILPKAREME  120
SFNRSPNPNK DFLFGSTSGI TCEYSSEKLG TQELAYEEAK IHNGDCFRSD TNDKKPMLER  180
LNCEPELSKN KDKHHIDLLN GMENNDGRVK KVLSSKYCKV SSNQKDTMVA GSDLDLKPGY  240
YSKKHCLKSL RSEKKYPIKK RRYFDGYTAS QSEETVRNEG LSGSPRKAFL STIACQKQPA  300
LQSRDSHVKL GIKSFRVPEL SIEVPETATI GSLKRTVLEA VTTILEGGLR IGVLVHGKKV  360
RDDNKMLLQT GISLDTLSDT LSFCLETNPP QSTKPLSPKD SDYMRPCNVP HTLTKCLPTL  420
GKHAKPSDSV ESDLDSKPSS PFRAKPVYSR ALIPVSPPLH AQALNVVPHR KPKRSEVAQR  480
RIRRPFSVAE VEALVQAVER LGTGRWRDVK LRAFDNAKHR TYVDLKDKWK TLVHTARISP  540
QQRRGEPVPQ ELLDRVLMAH AYWSQQQGKQ QLLEGPQKLE TSLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-574705724106Telomere binding protein TBP1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013614696.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614696.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_022564725.10.0telomere repeat-binding protein 5-like
SwissprotQ6R0E30.0TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A0D2ZTQ00.0A0A0D2ZTQ0_BRAOL; Uncharacterized protein
STRINGBo01118s020.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32402539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.10.0TRF-like 2