PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013614482.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 288aa    MW: 32973.3 Da    PI: 6.104
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013614482.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.22.5e-21105165259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg+ WrKYGqK++k+s++ rsYYrC+++   +C ++k+ ++ +e+p v  +tY g+H+++
  XP_013614482.1 105 NDGFLWRKYGQKSIKNSKYERSYYRCSYHidhDCGARKHEQQIKENPPVYRTTYFGHHTCK 165
                     8***************************9999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-2299165IPR003657WRKY domain
PROSITE profilePS5081119.27999167IPR003657WRKY domain
SuperFamilySSF1182909.94E-22101166IPR003657WRKY domain
SMARTSM007745.5E-31104166IPR003657WRKY domain
PfamPF031062.2E-21105165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MNSPHEKVVQ AILYGHSCAK RLKLWLEDPM ADDRSVSSYD LAKSIVHCFS NAISILSDQP  60
KSEDDQVSDL SSMDSSPPLP HSKRRKINST NSTKNWRDDS PDPYNDGFLW RKYGQKSIKN  120
SKYERSYYRC SYHIDHDCGA RKHEQQIKEN PPVYRTTYFG HHTCKINHNH DAVFTAVQDQ  180
VDDAGSCRII RFGKELDQEK GSHSTGFSLS VKHEESIIKE ETCTDQYRGI TGDDKDCQHV  240
MEENQSSLSS SYTPPLSSVS ETDMFDSDLL LNNLDSWDRY GLFDFGVH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-14105165969OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00619PBMTransfer from AT5G22570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013614482.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614482.10.0PREDICTED: probable WRKY transcription factor 38
SwissprotQ8GWF11e-122WRK38_ARATH; Probable WRKY transcription factor 38
TrEMBLA0A078GQM00.0A0A078GQM0_BRANA; BnaC09g36400D protein
TrEMBLA0A0D2ZSW50.0A0A0D2ZSW5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E4L80.0A0A3P6E4L8_BRAOL; Uncharacterized protein
STRINGBo01002s040.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136731727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.11e-112WRKY DNA-binding protein 38
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]
  3. Janda M, et al.
    Phospholipase D affects translocation of NPR1 to the nucleus in Arabidopsis thaliana.
    Front Plant Sci, 2015. 6: p. 59
    [PMID:25741350]