PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013614476.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 288aa    MW: 30999.5 Da    PI: 6.1478
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013614476.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.51.6e-36521493103
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaak 96 
                     + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ ++pai+e+tgt++++a ++    +   +  ++s +  + ++  
  XP_013614476.1  52 APKRPSKDRHTKVEGRGRRIRMPAGCAARIFQLTRELGHKSDGETIRWLLERSEPAIIEATGTGTIPAIAVsV--NGALKIPTDSTP--QFESDG 142
                     5699***********************************************************9999955421..222222222222..122222 PP

             TCP  97 skksqks 103
                     ++ ++++
  XP_013614476.1 143 GSGKRRR 149
                     2222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.77657111IPR017887Transcription factor TCP subgroup
PfamPF036342.4E-2957133IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGSNLEGKEA MAHLSDPDPE TNRGMLLKEE DDDPKKQQEV GFLQPMTSSV TAPKRPSKDR  60
HTKVEGRGRR IRMPAGCAAR IFQLTRELGH KSDGETIRWL LERSEPAIIE ATGTGTIPAI  120
AVSVNGALKI PTDSTPQFES DGGSGKRRRR NCTSEFVDIN RQDSSVTSGL APITASSYGV  180
NLMNVNAQNF VPFWQTGFVT GGPNQMGHMW AIPTVAAPSF LNGGTTRPVP SYVSNTSEAE  240
PQMGTSGGGD DGTTQTLRDF SLETYDKKEL QFLGCSGDNT SPSSCRGT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00007PBMTransfer from 495258Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013614476.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614476.10.0PREDICTED: transcription factor TCP19
RefseqXP_013676320.10.0transcription factor TCP19
RefseqXP_022551734.10.0transcription factor TCP19
SwissprotQ9LT891e-123TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A0D2ZSV20.0A0A0D2ZSV2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6D4A50.0A0A3P6D4A5_BRAOL; Uncharacterized protein
STRINGBo00998s020.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125832530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.21e-118TCP family protein