PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013613235.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 682aa    MW: 75421.5 Da    PI: 6.8145
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013613235.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.4e-194396356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    k +++t++q++eLe++F+ +++p++++r eL +kl+L+ +q+k+WFqNrR+++k
  XP_013613235.1 43 KYRRHTSYQIQELESFFKVCPHPNEKQRLELGSKLSLEGKQIKFWFQNRRTQMK 96
                    56789**********************************************999 PP
2START172.52.6e-542084263205
                     HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
           START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                     a  a++e++++a+++ p+W+k s    +s + d ++++f+ sk   +  e +r++g+v  ++ +lve+l+d++ qW e+++     a+t+evis+
  XP_013613235.1 208 AAVAMDEVIRLAEVDNPLWTKCSkserDSMKHDQYTSIFAGSKHpgFAAEGSRETGLVLINSLTLVETLMDTN-QWAEMFEcivaVASTVEVISN 301
                     56689******************9999999999******9988888888889*********************.********************* PP

                     T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
           START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                     g      galqlm+ae+q++splvp R + f+Ry++q+g+g w++vdvS d++++ +  +s+   ++lpSg++i++ +ng skvtw eh +++g+
  XP_013613235.1 302 GsggsrnGALQLMQAEFQVMSPLVPiRQVKFLRYCKQHGDGLWAVVDVSYDVNRESQDLKSFGGLKRLPSGCIIQDIGNGCSKVTWTEHSEYEGS 396
                     *******************************************************9989999999****************************** PP

                     XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 176 lphwllrslvksglaegaktwvatlqrqce 205
                     ++h l+++l++s++  ga +w+atlqr ce
  XP_013613235.1 397 HIHPLYQQLLGSSVGLGATKWLATLQRRCE 426
                     *****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.18E-182498IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-192598IPR009057Homeodomain-like
PROSITE profilePS5007116.1473898IPR001356Homeobox domain
SMARTSM003898.5E-1640102IPR001356Homeobox domain
CDDcd000861.81E-154398No hitNo description
PfamPF000465.8E-174396IPR001356Homeobox domain
PROSITE profilePS5084844.353197430IPR002913START domain
CDDcd088752.58E-104202426No hitNo description
SuperFamilySSF559612.53E-30203428No hitNo description
SMARTSM002343.6E-43206427IPR002913START domain
PfamPF018523.6E-48208427IPR002913START domain
Gene3DG3DSA:3.30.530.203.4E-4211410IPR023393START-like domain
SuperFamilySSF559617.47E-19454675No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MNGDFDISKG DDEFESDSFE AMSGDDDDKH EQRPKKKKKK MSKYRRHTSY QIQELESFFK  60
VCPHPNEKQR LELGSKLSLE GKQIKFWFQN RRTQMKTQLE RHENAILRQE NEKLRVENGI  120
LKEAMRSPPT CNNCGGAATP GEVSHEQQQL RMENAKLKYE LDKLCALANR FIGGSISLEQ  180
PSNGGVASQD LSLGHGFTRG SSTFMDIAAV AMDEVIRLAE VDNPLWTKCS KSERDSMKHD  240
QYTSIFAGSK HPGFAAEGSR ETGLVLINSL TLVETLMDTN QWAEMFECIV AVASTVEVIS  300
NGSGGSRNGA LQLMQAEFQV MSPLVPIRQV KFLRYCKQHG DGLWAVVDVS YDVNRESQDL  360
KSFGGLKRLP SGCIIQDIGN GCSKVTWTEH SEYEGSHIHP LYQQLLGSSV GLGATKWLAT  420
LQRRCESYTT LSSSPDQTDL SLAGTKSTLT LAQRMRSNFY SGITASPIHK WEKLVAENVG  480
QDTRILTRKS LQPSGVVLSA ATSMWLPVTQ QRLFEFLCDG KCRNQWDILC NGASMENMLL  540
IPQRQSEGRC ISLLQPAGKH QNESSMLILQ ETWSDASGAL VVYAPVDVPS MNMVMSGGDS  600
ANVALLPSGF SISPDGSSWS DQIDTNGRLV NHESKGCLLT VGFQILVNSV PTTKLNMESV  660
QTVNNLIACT IHKIKAALSI PA
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cells around the base of leaf primordia, in the outermost 2 to 3 cell layers along the boundary between two leaf primordia. Expressed in lateral root primordia and tips, and in the epidermal boundaries of two cotyledons at heart-stage embryo. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-GCATTAAATGC-3'. {ECO:0000269|PubMed:16778018}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00559DAPTransfer from AT5G52170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013613235.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256031e-99AB025603.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F17P19.
GenBankCP0026881e-99CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613235.10.0PREDICTED: homeobox-leucine zipper protein HDG7
SwissprotQ9LTK30.0HDG7_ARATH; Homeobox-leucine zipper protein HDG7
TrEMBLA0A0D3EA960.0A0A0D3EA96_BRAOL; Uncharacterized protein
STRINGBo9g104880.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52170.10.0homeodomain GLABROUS 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]