PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013612537.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 471aa    MW: 52460 Da    PI: 6.6685
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013612537.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.43.1e-16741135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  XP_013612537.1  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41
                    ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.1E-9155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-11546No hitNo description
CDDcd002029.45E-16654No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF003205.3E-14741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.3E-13740IPR013088Zinc finger, NHR/GATA-type
PfamPF139194.0E-8234331IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLVNYTPVRA RAEGDEVEID  60
DRRGGQKMMM INGMSMNKKR KPYQENFTVK RTNLEFSNGF KKRSLEEEAS NNRSSSGSVV  120
SNSESCDQSN VWETSFAACK KRTCVGRPKA ASSSVEKLTK DLFSILQEQQ FSCCVSGISE  180
EELLFENESP MVIGHGSVLL RDPHEDSEAS SLLVENSKSS SIHSQNSGGK AIKQEQLKRT  240
KSQVLGRHSL PLCNIDLKDV INFDEFIEKF TKGEQQKLMK LLPEVDSVDP PHSLMSMFES  300
SQFKENFSLF QQLVADGVFG TSTSSSGSKL EEFKTLAKLA LSDPDKSHML ESYQMLKGQR  360
KGIEDSSRVS NQTPSDNNRL VTIERPCESL NQNFSETRVV TKSPKEVMKI RSKHIETKEI  420
IENSVSSLNH MSYGGSMVCG GYEDNDNSDQ DLLLDVPSNG SFPQAELLHM I
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013612537.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834950.0AC183495.1 Brassica oleracea Contig A, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013612537.10.0PREDICTED: GATA transcription factor 27-like isoform X3
SwissprotQ5PP380.0GAT27_ARATH; GATA transcription factor 27
TrEMBLA0A0D3AUX00.0A0A0D3AUX0_BRAOL; Uncharacterized protein
STRINGBo2g132210.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.10.0GATA transcription factor 27