PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013612427.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 846aa MW: 92838.6 Da PI: 6.2404 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55 | 1.4e-17 | 27 | 85 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR + k+ XP_013612427.1 27 KYVRYTSEQVEALERVYSECPKPSSLRRQQLIRECsifaNIEPKQIKVWFQNRRCRGKQ 85 5679***************************************************9986 PP | |||||||
2 | START | 153.1 | 2.3e-48 | 163 | 368 | 2 | 202 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e+++ka+ ++ Wv+++ +++g++++ +f+ s+ +sg a+ra+g+v +++ +e+l+d++ W +++++ e+ g g+++l XP_013612427.1 163 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQRCSGVAARACGLVSLEPV-KIAEILKDRPSWYRDCRSLEVFTMFPAGngGTIELV 256 7899******************************************************.7777777777***********999999999****** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++++a+++l+p Rdf+++Ry+ +l g++v++++S++ p+ s++vRae+l Sg+li+p+++g+s + +v+h +l++++++ +lr+l+ XP_013612427.1 257 YMQTYAPTTLAPaRDFWTLRYTTSLDNGSYVVCERSLSGSGAGPNaasASQFVRAEMLSSGYLIRPCDGGGSIINIVDHLNLEAWSVPDVLRPLY 351 **************************************999999989999********************************************* PP HHHHHHHHHHHHHHTXX CS START 186 ksglaegaktwvatlqr 202 +s+ + ++k++ + l++ XP_013612427.1 352 ESSKVVAQKMTISGLRY 368 **********9999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.4E-18 | 8 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.337 | 22 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-14 | 24 | 90 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-16 | 24 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.21E-15 | 27 | 87 | No hit | No description |
Pfam | PF00046 | 3.5E-15 | 28 | 85 | IPR001356 | Homeobox domain |
CDD | cd14686 | 3.18E-5 | 79 | 118 | No hit | No description |
PROSITE profile | PS50848 | 27.029 | 153 | 381 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.14E-34 | 162 | 374 | No hit | No description |
SMART | SM00234 | 4.7E-38 | 162 | 372 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 9.6E-20 | 162 | 356 | IPR023393 | START-like domain |
Pfam | PF01852 | 5.2E-46 | 163 | 368 | IPR002913 | START domain |
Pfam | PF08670 | 8.4E-47 | 697 | 845 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 846 aa Download sequence Send to blast |
MEMMEVPNHR ERSTSDNMNR HLDSNGKYVR YTSEQVEALE RVYSECPKPS SLRRQQLIRE 60 CSIFANIEPK QIKVWFQNRR CRGKQRKEAS RLQSVNRKLS AMNKLLMEEN DRLQKQVSQL 120 VCENGYMKQQ LTTVVNDVSC DSVVTTPKHS IRDANSPAGL ISIAEETLAE FLSKATGTAV 180 DWVQMPGMKP GPDSVGIFAI SQRCSGVAAR ACGLVSLEPV KIAEILKDRP SWYRDCRSLE 240 VFTMFPAGNG GTIELVYMQT YAPTTLAPAR DFWTLRYTTS LDNGSYVVCE RSLSGSGAGP 300 NAASASQFVR AEMLSSGYLI RPCDGGGSII NIVDHLNLEA WSVPDVLRPL YESSKVVAQK 360 MTISGLRYIR QLAQESNGEL VYGLGRQPAV LRTFSQRLSR GFNDAVNGFG DDGWSTMHCD 420 GSEDIIVAIN FTKHLSNISS SLSFLGGVLC GKASMLLQNV PPAVLIQFLR EHRSEWADFH 480 VDAYSAATLK TGAFAYPGVR PTRFTGTQII MPLGHTIEHE ETLEVVRLEG HSLAQEDAFM 540 SRDVHLLQIC SGIDENAVGA CSELIFAPIN EMFPDDAPLV PSGFRVIPID AKTGDGQDLI 600 TSNHRTLDLT SSLEVGPSPE TASGNSSSSC SSSRCILTIA FQFPFEPNLQ ENVAGMACQY 660 VRSVISSVQR VAMAISPSGI SPSLGSKLSP GSPEAVTLSQ WISQSYTHHL GSKLVTIDSL 720 GSNDSVLKLI WDHQDAILCC TLKPQPVFMF ANQAGLDMLE TTLVALQDIT LEKIFDESGR 780 KALCSDFAKL MQQGFACLPS GICLSTMGRH VTYEQAVAWK VFAASQNDNN NSLHCLAFSF 840 VNWSFV |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at the earliest stages and throughout LSM initiation and development. In embryo development, expressed at the heart stage until the 'walking stick' stage in the adaxial portion of the cotyledon primordia, the shoot apical meristem (SAM) and the vascular precursor cells of the hypocotyl and root. In developing flowers, expressed first at stage 1 in the center of L3 layer and then expands to the center of L2 and L1 layers. Expressed in the center of flower meristem through stages 4 and 5. At stage 6, expressed in the adaxial side of the carpel primordia and then on the adaxial carpel face. {ECO:0000269|PubMed:11169198}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the interfascicular regions of stem and vascular bundles of young roots and leaves. {ECO:0000269|PubMed:10559440}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013612427.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013612427.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein REVOLUTA | ||||
Swissprot | Q9SE43 | 0.0 | REV_ARATH; Homeobox-leucine zipper protein REVOLUTA | ||||
TrEMBL | A0A0D3AKP2 | 0.0 | A0A0D3AKP2_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g024680.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4779 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |