PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013612377.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 579aa    MW: 63477.2 Da    PI: 5.1287
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013612377.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.3e-08248268526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C++Gd+C +aHg
  XP_013612377.1 248 PCPEFRK-GSCSRGDSCEYAHG 268
                     8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.95E-159137IPR020683Ankyrin repeat-containing domain
CDDcd002041.64E-1611156No hitNo description
PfamPF127966.5E-1052126IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0115787IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.201.5E-1657157IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.87557133IPR020683Ankyrin repeat-containing domain
SMARTSM002480.002692124IPR002110Ankyrin repeat
PROSITE profilePS500889.72592127IPR002110Ankyrin repeat
SMARTSM003562.5E-5243269IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4247270IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-6248268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619248270IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4276306IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.136278302IPR000571Zinc finger, CCCH-type
SMARTSM0035620278301IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MGDDELSHLK FTLLLESAAC NDLSGFKSLI EEEGLSTIDR SGLWYGRRLG SKKMCFEERT  60
PLMIAALFGS KEIVDFIIST GLVDVNRSCG SDGATALHCA VSGLSGNSLE VVTLLLSASA  120
DPESRDADGN KPVDVMVSPC LSPVFSGRKK VLERLLKGNE ADVQEEEVEA EVEVEVSLSP  180
PRKEYPIDPT LPDIKNGIYG TDEFRMYAFK IKPCSRAYSH DWTECPFVHP GENARRRDPR  240
KYHYSCVPCP EFRKGSCSRG DSCEYAHGIF ECWLHPAQYR TRLCKDETNC SRRVCFFAHK  300
PDELRPLYTS TGSGVPSPRS SFSSCNSAAF DMGPISPLPP LSPNGGVLTT PPLSPNGVPS  360
PIGSGKPWMN WPSATPPTLH LPGSRLKSAL NAREINFSEE IHQSLASPGR WNNNTAASPP  420
FSGNGMNRLS SGGISPVHSL SDMFGASSLS SSPVGANYQF SMDSLASRAA AFANQRSQSF  480
IERSNELNQH RPAMTTACLD DWGSLDGKLD WSVNGDELQE LRNSTSFRLR AGSMESRTPT  540
ELEEPDVSWV EPLVKEPQEP RVAPVWMEQS YMETEQTVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013612377.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013612376.10.0PREDICTED: zinc finger CCCH domain-containing protein 66
RefseqXP_013612377.10.0PREDICTED: zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A0D3ECH10.0A0A0D3ECH1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6DMI20.0A0A3P6DMI2_BRAOL; Uncharacterized protein
STRINGBo9g135400.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein