PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013612376.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 579aa MW: 63477.2 Da PI: 5.1287 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.2 | 1.3e-08 | 248 | 268 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd+C +aHg XP_013612376.1 248 PCPEFRK-GSCSRGDSCEYAHG 268 8******.*************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 2.95E-15 | 9 | 137 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.64E-16 | 11 | 156 | No hit | No description |
Pfam | PF12796 | 6.5E-10 | 52 | 126 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.011 | 57 | 87 | IPR002110 | Ankyrin repeat |
Gene3D | G3DSA:1.25.40.20 | 1.5E-16 | 57 | 157 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 14.875 | 57 | 133 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0026 | 92 | 124 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 9.725 | 92 | 127 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 2.5E-5 | 243 | 269 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-4 | 247 | 270 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.2E-6 | 248 | 268 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.619 | 248 | 270 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-4 | 276 | 306 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.136 | 278 | 302 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 20 | 278 | 301 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 579 aa Download sequence Send to blast |
MGDDELSHLK FTLLLESAAC NDLSGFKSLI EEEGLSTIDR SGLWYGRRLG SKKMCFEERT 60 PLMIAALFGS KEIVDFIIST GLVDVNRSCG SDGATALHCA VSGLSGNSLE VVTLLLSASA 120 DPESRDADGN KPVDVMVSPC LSPVFSGRKK VLERLLKGNE ADVQEEEVEA EVEVEVSLSP 180 PRKEYPIDPT LPDIKNGIYG TDEFRMYAFK IKPCSRAYSH DWTECPFVHP GENARRRDPR 240 KYHYSCVPCP EFRKGSCSRG DSCEYAHGIF ECWLHPAQYR TRLCKDETNC SRRVCFFAHK 300 PDELRPLYTS TGSGVPSPRS SFSSCNSAAF DMGPISPLPP LSPNGGVLTT PPLSPNGVPS 360 PIGSGKPWMN WPSATPPTLH LPGSRLKSAL NAREINFSEE IHQSLASPGR WNNNTAASPP 420 FSGNGMNRLS SGGISPVHSL SDMFGASSLS SSPVGANYQF SMDSLASRAA AFANQRSQSF 480 IERSNELNQH RPAMTTACLD DWGSLDGKLD WSVNGDELQE LRNSTSFRLR AGSMESRTPT 540 ELEEPDVSWV EPLVKEPQEP RVAPVWMEQS YMETEQTVA |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00566 | DAP | Transfer from AT5G58620 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013612376.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013612376.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 66 | ||||
Refseq | XP_013612377.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 66 | ||||
Swissprot | Q9LUZ4 | 0.0 | C3H66_ARATH; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | A0A0D3ECH1 | 0.0 | A0A0D3ECH1_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6DMI2 | 0.0 | A0A3P6DMI2_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g135400.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM877 | 26 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G58620.1 | 0.0 | C3H family protein |