PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013612085.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 714aa    MW: 74977 Da    PI: 10.29
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013612085.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.2e-09197226130
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIart 30 
                      r++W+ eEd+ l+ avk++G g+W++I+++
   XP_013612085.1 197 RKKWSVEEDLELIAAVKRHGEGSWALISKE 226
                      789************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-11190244IPR009057Homeodomain-like
PROSITE profilePS5129412.966192249IPR017930Myb domain
SuperFamilySSF466892.62E-9193247IPR009057Homeodomain-like
SMARTSM007173.7E-5196247IPR001005SANT/Myb domain
PfamPF002491.0E-7197226IPR001005SANT/Myb domain
CDDcd116603.79E-8198241No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MVDSCSSNKK RKEFISEGDI ATLLQRYDTM TILKLLQEMA YYAEPKMDWT ELVKKTSTGI  60
TSAREYQLLW RHLAYRDSLL PMDDNALLQD DDSDMEFELE ASPAVTVDAV SEAVAHVKVI  120
AASYVPSESD IPEDSICEAP LTINIPYGLQ RRPLEPSGSY WSSRGMNITF PISLQKAAEG  180
HNGNGLASNM AGPRKKRKKW SVEEDLELIA AVKRHGEGSW ALISKEEYEG EITVAQLSQR  240
WGSIRRRGDI SNSSTQSYQQ RTEAANRALS LAVGNRIPSK KVAVGIPPVL TSGSTTGAQG  300
NGSSLQGQQQ AKPVVQAIPR AATAVQTAKS RVTARKPTST LRAELMVTAN SVATAACMSG  360
LGTAASVPKV EPGKNAAPAL VSKVKSSQAS LPRPSGISSV LNVEPVKTAS AASLPRPSGI  420
SPTLNAEHVK SASTASFPRP LGTISSSKAE PVKTASAAAL PRLSAPKADL VKTGHAVSLP  480
RPSGITSSTK AELMKTASAA SSPRPESMPS APKGEPLKSV SAAAAATTKT QVVGPLSARN  540
AANGPFNKPS PMAPFSKGPT IQNISVPSRF ASSRLAPTQR VNATTAMPQN PSVGAAVTSS  600
SKPVGVQKEQ TQGSRTSPLV TTTLQPNKTI STNSVISAGK PVATQVDTPP SLMPKKDQVP  660
QTCTDKSSLA KPPEKMSSST VPPSVVAEPE SKPKDEASKG KSPDVATVTG TEQQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194198KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013612085.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013612085.10.0PREDICTED: mucin-2-like
TrEMBLA0A0D3E5M40.0A0A0D3E5M4_BRAOL; Uncharacterized protein
STRINGBo9g052030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58220.10.0MYB_related family protein