PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013612061.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 432aa    MW: 46929.9 Da    PI: 7.9858
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013612061.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-06107128426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     ++Cr++   G C++Gd+C++ H+
  XP_013612061.1 107 KICRYWVD-GSCSHGDKCRYLHC 128
                     79******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.9252854IPR000571Zinc finger, CCCH-type
SMARTSM003560.772853IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.73E-6103127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.521103130IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-4105129IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-4106128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-5107125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.104.5E-45126423IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.1E-5134173IPR001680WD40 repeat
SuperFamilySSF509781.42E-44135427IPR017986WD40-repeat-containing domain
PfamPF004004.3E-4137173IPR001680WD40 repeat
PROSITE profilePS5029419.776141343IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.85141182IPR001680WD40 repeat
PRINTSPR003201.3E-6160174IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780160174IPR019775WD40 repeat, conserved site
SMARTSM0032013213250IPR001680WD40 repeat
SMARTSM003200.033257294IPR001680WD40 repeat
PfamPF004000.06261294IPR001680WD40 repeat
PROSITE profilePS5008211.277264303IPR001680WD40 repeat
PRINTSPR003201.3E-6281295IPR020472G-protein beta WD-40 repeat
SMARTSM003201.9E-4297334IPR001680WD40 repeat
PfamPF004000.0046299333IPR001680WD40 repeat
PRINTSPR003201.3E-6321335IPR020472G-protein beta WD-40 repeat
SMARTSM003204.4338381IPR001680WD40 repeat
SMARTSM003203.4384421IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MDFNLNGGNK RVVDRLGGSN RPAAAAKGSR QEVWSYWRAG RCNRNPCQFL HRELPGPVPS  60
QVXSNKRVAD ESGFAGPGRR RGPGFNGNSS NTWGRFGGNR TVTKTEKICR YWVDGSCSHG  120
DKCRYLHCWS KGDSFSLLTQ LDGHEKLVSG IALPSGSDKL YTGSKDETIR VWDCASGQCT  180
SVLNLGAEVG CVISEGPWLL VGMPNLVKAW NIETNTDQSL SGPVGQVYSF VVGTDLLFAG  240
TQDGSILAWR YSAATNCFEP AASLTGHTLG VVTLYVGANR LYSGSMDKSI KVWSLDNLQC  300
IQTLTDHTSV VMSLICWDQF LLSCSLDNTV KIWAAVEGGD LEVTYTHKEK HGVLALCGVH  360
DAEAKPVLLC CCNDSTLRLY DLPSFTERGK IFAKQEIRSI QIGPGGIFFT GDGTGQVKVW  420
KWSTAPITAA MS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ovp_B2e-19120333175387F-box/WD repeat protein 7
2ovq_B2e-19120333175387F-box/WD repeat protein 7
2ovr_B2e-19120333175387F-box/WD repeat protein 7
5v4b_B2e-19120333175387F-box/WD repeat-containing protein 7
6g6m_A2e-191384268323Tako8
6g6n_A2e-191384268323Tako8
6g6n_B2e-191384268323Tako8
6g6n_C2e-191384268323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013612061.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013612061.10.0PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 63
SwissprotQ9FNZ10.0C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
TrEMBLM4EHM40.0M4EHM4_BRARP; Uncharacterized protein
STRINGBra028289.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein