PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013611827.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 566aa MW: 62982 Da PI: 8.5586 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.6 | 5.2e-07 | 467 | 516 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + +Rt ++k++w ++ XP_013611827.1 467 RRPFSVTEVEALVQAVEKLGTGRWRDVKHSAFedaDHRTYVDLKDKWKTL 516 678999*********************999999999***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 1.52E-8 | 292 | 364 | IPR029071 | Ubiquitin-related domain |
Gene3D | G3DSA:3.10.20.90 | 5.1E-5 | 294 | 365 | No hit | No description |
PROSITE profile | PS50053 | 10.266 | 297 | 366 | IPR000626 | Ubiquitin domain |
PROSITE profile | PS51294 | 15.914 | 462 | 521 | IPR017930 | Myb domain |
SMART | SM00717 | 6.2E-7 | 466 | 519 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-10 | 467 | 517 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 4.15E-17 | 468 | 518 | No hit | No description |
SuperFamily | SSF46689 | 3.34E-15 | 468 | 549 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0031965 | Cellular Component | nuclear membrane | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 566 aa Download sequence Send to blast |
MVSHKCVEEF SLQFPANARA PRSARRRSFK KEEITENDKT CAIDLLATVA ENLLSESGSS 60 HMSIDKPVED HCLVKEEFPV EDKPLKPATL PEFNPYQGSS MSPCGFSSVI NGKVEIEAEG 120 FSHSGGIDSC QAGQDLKPGI DGGAAVLDER PNGVGSLGGS SSRTKVPSMG AGASLGALDD 180 VHMFSRDDDE NFSGYICPRV TKKSPRSVPR VGDRRIRKIL ASRHWKGGSR HSEAKSWRNY 240 YLHHQRSYPI KKRKYFDHIS DSVSDDYRLR SKMQRGSRAV STMKGPGASF VSSDSHVRLR 300 IKSFRVPELF VEIPETATVG SLKRMVMEAV STLLSDGHRV GLMVQGKKVR DDNKTLHQTG 360 ISQDNTHLDS LDFSLEPSSE APHLLSSNPS GHVCEELPMC HASDMLFKTE PDLALFQSGS 420 FDKETAADDS KALVHAALTE LSPPQPPRHK SNKQQQQQHQ TAQRRMRRPF SVTEVEALVQ 480 AVEKLGTGRW RDVKHSAFED ADHRTYVDLK DKWKTLVHTA KISPQQRRGE PVPQELLNRV 540 LNAHGYWSQQ HMETLALPKP ESVLLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2aje_A | 3e-51 | 463 | 548 | 9 | 94 | telomere repeat-binding protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 244 | 253 | QRSYPIKKRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed ubiquitously. Highest expression in flowers and leaves. {ECO:0000269|PubMed:15364931, ECO:0000269|PubMed:15688221}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to the plant telomeric double-stranded DNA sequences 5'-GGTTTAG-3'. At least 4 repeats of telomeric sequences are required for binding. Induces DNA bending. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013611827.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013611827.1 | 0.0 | PREDICTED: telomere repeat-binding protein 1 isoform X2 | ||||
Swissprot | Q8L7L8 | 0.0 | TRP1_ARATH; Telomere repeat-binding protein 1 | ||||
TrEMBL | A0A0D3ECS3 | 0.0 | A0A0D3ECS3_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g139390.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 5e-94 | TRF-like 2 |
Publications ? help Back to Top | |||
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