PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013611824.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 567aa MW: 63110.2 Da PI: 8.7055 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.6 | 5.2e-07 | 468 | 517 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + +Rt ++k++w ++ XP_013611824.1 468 RRPFSVTEVEALVQAVEKLGTGRWRDVKHSAFedaDHRTYVDLKDKWKTL 517 678999*********************999999999***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 1.52E-8 | 293 | 365 | IPR029071 | Ubiquitin-related domain |
Gene3D | G3DSA:3.10.20.90 | 5.1E-5 | 295 | 366 | No hit | No description |
PROSITE profile | PS50053 | 10.266 | 298 | 367 | IPR000626 | Ubiquitin domain |
PROSITE profile | PS51294 | 15.914 | 463 | 522 | IPR017930 | Myb domain |
SMART | SM00717 | 6.2E-7 | 467 | 520 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-10 | 468 | 518 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 4.98E-17 | 469 | 519 | No hit | No description |
SuperFamily | SSF46689 | 3.34E-15 | 469 | 550 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0031965 | Cellular Component | nuclear membrane | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 567 aa Download sequence Send to blast |
MVSHKCVEEF SLQFPANARA PRSARKRRSF KKEEITENDK TCAIDLLATV AENLLSESGS 60 SHMSIDKPVE DHCLVKEEFP VEDKPLKPAT LPEFNPYQGS SMSPCGFSSV INGKVEIEAE 120 GFSHSGGIDS CQAGQDLKPG IDGGAAVLDE RPNGVGSLGG SSSRTKVPSM GAGASLGALD 180 DVHMFSRDDD ENFSGYICPR VTKKSPRSVP RVGDRRIRKI LASRHWKGGS RHSEAKSWRN 240 YYLHHQRSYP IKKRKYFDHI SDSVSDDYRL RSKMQRGSRA VSTMKGPGAS FVSSDSHVRL 300 RIKSFRVPEL FVEIPETATV GSLKRMVMEA VSTLLSDGHR VGLMVQGKKV RDDNKTLHQT 360 GISQDNTHLD SLDFSLEPSS EAPHLLSSNP SGHVCEELPM CHASDMLFKT EPDLALFQSG 420 SFDKETAADD SKALVHAALT ELSPPQPPRH KSNKQQQQQH QTAQRRMRRP FSVTEVEALV 480 QAVEKLGTGR WRDVKHSAFE DADHRTYVDL KDKWKTLVHT AKISPQQRRG EPVPQELLNR 540 VLNAHGYWSQ QHMETLALPK PESVLLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2aje_A | 3e-51 | 464 | 549 | 9 | 94 | telomere repeat-binding protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 245 | 254 | QRSYPIKKRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed ubiquitously. Highest expression in flowers and leaves. {ECO:0000269|PubMed:15364931, ECO:0000269|PubMed:15688221}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to the plant telomeric double-stranded DNA sequences 5'-GGTTTAG-3'. At least 4 repeats of telomeric sequences are required for binding. Induces DNA bending. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013611824.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013611823.1 | 0.0 | PREDICTED: telomere repeat-binding protein 1 isoform X1 | ||||
Refseq | XP_013611824.1 | 0.0 | PREDICTED: telomere repeat-binding protein 1 isoform X1 | ||||
Refseq | XP_013611825.1 | 0.0 | PREDICTED: telomere repeat-binding protein 1 isoform X1 | ||||
Refseq | XP_013611826.1 | 0.0 | PREDICTED: telomere repeat-binding protein 1 isoform X1 | ||||
Swissprot | Q8L7L8 | 0.0 | TRP1_ARATH; Telomere repeat-binding protein 1 | ||||
TrEMBL | A0A0D3ECS3 | 0.0 | A0A0D3ECS3_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g139390.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 7e-94 | TRF-like 2 |
Publications ? help Back to Top | |||
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