PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013611633.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 252aa MW: 29088.9 Da PI: 8.073 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 44 | 5.6e-14 | 33 | 114 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++ + +L++a + rl g+l++++W+ev++++ + g ++ +qCk++++ l+k+yk++k+ + s +++fd+l+ XP_013611633.1 33 WTEDATATLLQAWGHRFVRLDFGNLRQNDWKEVADAVnssHGSGRPKTDTQCKSRIDTLKKKYKAEKAKLSP------SAWRFFDRLD 114 *************************************9555555677********************99986......57*****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.5E-24 | 31 | 115 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
METTTPPPPP AKPQQPHSTV SHRQRTAGRE DWWTEDATAT LLQAWGHRFV RLDFGNLRQN 60 DWKEVADAVN SSHGSGRPKT DTQCKSRIDT LKKKYKAEKA KLSPSAWRFF DRLDVLIGPV 120 SKKPAEEVVK SEALKPYLSL TGTKYRESSL EDDDEEEEDG DWGFVTRKHP RVEEGDLSEE 180 TACKELARTI VKLGEVYERI EGRKQKMMVD LEKQRMEVVK EIELQRMNML MEMQLELEKS 240 KNRKRGDCSG KK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00488 | DAP | Transfer from AT5G05550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013611633.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189201 | 0.0 | AC189201.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005N03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013611633.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2 | ||||
Refseq | XP_013737866.1 | 0.0 | trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A0D3EHL1 | 0.0 | A0A0D3EHL1_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6EDP8 | 0.0 | A0A3P6EDP8_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g177060.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4926 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05550.1 | 4e-88 | sequence-specific DNA binding transcription factors |